forked from mirrors/nixpkgs
d7c3926352
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bcftools/versions.
39 lines
967 B
Nix
39 lines
967 B
Nix
{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, curl, perl, python, bash }:
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stdenv.mkDerivation rec {
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name = "${pname}-${version}";
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pname = "bcftools";
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version = "1.9";
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src = fetchurl {
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url = "https://github.com/samtools/bcftools/releases/download/${version}/${name}.tar.bz2";
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sha256 = "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg";
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};
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buildInputs = [ htslib zlib bzip2 lzma curl perl python ];
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makeFlags = [
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"HSTDIR=${htslib}"
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"prefix=$(out)"
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"CC=cc"
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];
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preCheck = ''
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patchShebangs misc/
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patchShebangs test/
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sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with stdenv.lib; {
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description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
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license = licenses.mit;
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homepage = http://www.htslib.org/;
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platforms = platforms.unix;
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maintainers = [ maintainers.mimadrid ];
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};
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}
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