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nixpkgs/pkgs/applications/science/biology/picard-tools/default.nix
R. RyanTM 36a0335d02 picard-tools: 2.18.14 -> 2.18.17 (#50647)
* picard-tools: 2.18.14 -> 2.18.16

Changelog: https://github.com/broadinstitute/picard/releases/tag/2.18.16
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions

* picard-tools: 2.18.16 -> 2.18.17

Changelog: https://github.com/broadinstitute/picard/releases/tag/2.18.17
2018-11-27 14:31:09 +01:00

32 lines
941 B
Nix

{stdenv, fetchurl, jre, makeWrapper}:
stdenv.mkDerivation rec {
name = "picard-tools-${version}";
version = "2.18.17";
src = fetchurl {
url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar";
sha256 = "0ks7ymrjfya5h77hp0bqyipzdri0kf97c8wks32nvwkj821687zm";
};
nativeBuildInputs = [ makeWrapper ];
buildInputs = [ jre ];
phases = [ "installPhase" ];
installPhase = ''
mkdir -p $out/libexec/picard
cp $src $out/libexec/picard/picard.jar
mkdir -p $out/bin
makeWrapper ${jre}/bin/java $out/bin/picard --add-flags "-jar $out/libexec/picard/picard.jar"
'';
meta = with stdenv.lib; {
description = "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF";
license = licenses.mit;
homepage = https://broadinstitute.github.io/picard/;
maintainers = with maintainers; [ jbedo ];
platforms = platforms.all;
};
}