3
0
Fork 0
forked from mirrors/nixpkgs
nixpkgs/pkgs/applications/science/biology/somatic-sniper/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

30 lines
752 B
Nix

{lib, stdenv, fetchFromGitHub, cmake, zlib, ncurses}:
stdenv.mkDerivation rec {
pname = "somatic-sniper";
version = "1.0.5.0";
src = fetchFromGitHub {
owner = "genome";
repo = "somatic-sniper";
rev = "v${version}";
sha256 = "0lk7p9sp6mp50f6w1nppqhr40fcwy1asw06ivw8w8jvvnwaqf987";
};
patches = [ ./somatic-sniper.patch ];
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ncurses ];
enableParallelBuilding = false;
meta = with lib; {
description = "Identify single nucleotide positions that are different between tumor and normal";
license = licenses.mit;
homepage = "https://github.com/genome/somatic-sniper";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.linux;
};
}