forked from mirrors/nixpkgs
42 lines
1.2 KiB
Nix
42 lines
1.2 KiB
Nix
{lib, stdenv, fetchpatch, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "octopus";
|
|
version = "0.7.3";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "luntergroup";
|
|
repo = "octopus";
|
|
rev = "v${version}";
|
|
sha256 = "sha256-sPOBZ0YrEdjMNVye/xwqwA5IpsLy2jWN3sm/ce1fLg4=";
|
|
};
|
|
|
|
patches = [
|
|
# Backport TZ patchs (https://github.com/luntergroup/octopus/issues/149)
|
|
(fetchpatch {
|
|
url = "https://github.com/luntergroup/octopus/commit/3dbd8cc33616129ad356e99a4dae82e4f6702250.patch";
|
|
sha256 = "sha256-UCufVU9x+L1zCEhkr/48KFYRvh8w26w8Jr+O+wULKK8=";
|
|
})
|
|
(fetchpatch {
|
|
url = "https://github.com/luntergroup/octopus/commit/af5a66a2792bd098fb53eb79fb4822625f09305e.patch";
|
|
sha256 = "sha256-r8jv6EZHfTWVLYUBau3F+ilOd9IeH8rmatorEY5LXP4=";
|
|
})
|
|
];
|
|
|
|
nativeBuildInputs = [ cmake pkg-config ];
|
|
buildInputs = [ boost gmp htslib zlib xz ];
|
|
|
|
postInstall = ''
|
|
mkdir $out/bin
|
|
mv $out/octopus $out/bin
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Bayesian haplotype-based mutation calling";
|
|
license = licenses.mit;
|
|
homepage = "https://github.com/luntergroup/octopus";
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.x86_64;
|
|
};
|
|
}
|