forked from mirrors/nixpkgs
ecc46f194c
arviz v0.11.4 has, according to its requirements.txt, a dependency on typing-extensions < 4. Currently, only typing-extensions v.4.0.1 are available in nixpkgs, while the above version constraint seems unnecessary, see this arviz PR: https://github.com/arviz-devs/arviz/pull/1948/files. This also activates tests that use zarr and to which changes are made in above PR. I thought those changes might be related to unconstraining the typing-extensions version, but looks like they are not.
106 lines
2.7 KiB
Nix
106 lines
2.7 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, bokeh
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, emcee
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, matplotlib
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, netcdf4
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, numba
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, numpy
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, pandas
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, pytest
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, cloudpickle
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, scipy
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, setuptools
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, typing-extensions
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# , tensorflow-probability (incompatible version)
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, xarray
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, zarr
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, h5py
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#, pymc3 (broken)
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#, pyro-ppl (broken)
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#, pystan (not packaged)
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#, numpyro (not packaged)
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}:
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buildPythonPackage rec {
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pname = "arviz";
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version = "0.11.4";
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src = fetchFromGitHub {
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owner = "arviz-devs";
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repo = "arviz";
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rev = "v${version}";
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sha256 = "0vindadyxhxhrhbalys6kzrda2d4qpqbqbsbwfprp8pxkldgk548";
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};
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propagatedBuildInputs = [
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# needed to install
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matplotlib
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netcdf4
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pandas
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xarray
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# needed to import
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setuptools
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# not needed to import, but used by many functions
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# and is listed as a dependency in the documentation
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numpy
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scipy
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];
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postPatch = ''
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substituteInPlace requirements.txt \
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--replace "typing_extensions>=3.7.4.3,<4" "typing_extensions>=3.7.4.3"
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'';
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checkInputs = [
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bokeh
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emcee
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numba
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pytest
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cloudpickle
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zarr
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#tensorflow-probability (used by disabled tests)
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h5py
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#pymc3 (broken, used by disabled tests)
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#pyro-ppl (broken, used by disabled tests)
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#pystan (not packaged)
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#numpyro (not packaged, used by disabled tests)
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];
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# check requires pymc3 and pyro-ppl, which are currently broken, and pystan
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# and numpyro, which are not yet packaged, and an incompatible (old) version
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# of tensorflow-probability. some checks also need to make
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# directories and do not have permission to do so. So we can only check part
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# of the package
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# Additionally, there are some failures with the plots test, which revolve
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# around attempting to output .mp4 files through an interface that only wants
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# to output .html files.
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# The following test have been disabled as a result: data_cmdstanpy,
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# data_numpyro, data_pyro, data_pystan, data_tfp, data_pymc3 and plots.
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checkPhase = ''
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cd arviz/tests/
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export HOME=$TMPDIR
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pytest \
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base_tests/test_data.py \
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base_tests/test_diagnostics.py \
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base_tests/test_plot_utils.py \
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base_tests/test_rcparams.py \
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base_tests/test_stats.py \
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base_tests/test_stats_numba.py \
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base_tests/test_stats_utils.py \
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base_tests/test_utils.py \
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base_tests/test_utils_numba.py \
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base_tests/test_data_zarr.py \
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external_tests/test_data_cmdstan.py \
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external_tests/test_data_emcee.py
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'';
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meta = with lib; {
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description = "ArviZ is a Python package for exploratory analysis of Bayesian models";
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homepage = "https://arviz-devs.github.io/arviz/";
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license = licenses.asl20;
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maintainers = [ maintainers.omnipotententity ];
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};
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}
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