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Pjotr Prins d78d018ad8 Added ncbi-tools
svn path=/nixpkgs/trunk/; revision=12003
2008-06-06 19:42:00 +00:00
..
a52dec a52dec: nix-expr review, shared build 2008-02-06 19:00:56 +00:00
aalib * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
acl Merged with trunk 2008-01-15 00:55:21 +00:00
agg GNU Gnash 0.8.2, Agg 2.5. 2008-03-10 09:48:17 +00:00
apr * Updated Apache-related packages. 2008-02-10 17:39:07 +00:00
apr-util * Updated Apache-related packages. 2008-02-10 17:39:07 +00:00
arts * Refactoring: move KDE and Gnome out of development/libraries into 2007-02-28 16:18:58 +00:00
aspell Add Aspell Esperanto dictionary. 2008-02-14 13:39:03 +00:00
aterm * Merged most of the stdenv-updates branch. Some stuff didn't 2008-02-20 23:02:41 +00:00
attr Merged with trunk 2008-01-15 00:55:21 +00:00
audiofile Merged with trunk 2008-01-15 00:55:21 +00:00
avahi Differentiate between longDescription' and description'. 2008-03-20 14:35:03 +00:00
axis Added Apache Axis 1.3 (Apache Axis is an implementation of the SOAP 2006-04-03 13:00:10 +00:00
babl Added babl (pixel image transformation library usesd by gegl) 2008-04-04 15:11:27 +00:00
beecrypt * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
bluez-libs * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
boehm-gc Merged with trunk 2008-01-15 00:55:21 +00:00
boost Revert "boost: compiles with gcc-4.2": it is not needed in trunk 2008-01-28 20:25:21 +00:00
cairo 1.4.4 -> 1.4.6 2007-05-13 21:45:43 +00:00
cairomm cairomm added 2008-02-03 13:18:15 +00:00
cfitsio cfitsio added 2008-01-28 19:46:59 +00:00
chmlib Merged with trunk. 2007-11-16 21:05:15 +00:00
cil * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
cil-aterm * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
clanlib add clanlib 2007-07-22 18:22:46 +00:00
clearsilver * Fix a bunch of URLs. 2007-09-11 10:15:07 +00:00
clucene-core Merged with trunk. 2007-11-16 21:05:15 +00:00
coredumper Merged with trunk 2008-01-15 00:55:21 +00:00
cppunit Added cppunit (kde4 needs it) 2007-10-01 15:09:29 +00:00
cracklib Merged with trunk 2008-01-15 00:55:21 +00:00
ctl Nix-expr style review 2008-01-31 10:41:04 +00:00
cyrus-sasl Added cyrus-sasl-2.1.22 with openssl 2007-10-01 15:11:38 +00:00
db4 Merged with trunk 2008-01-15 00:55:21 +00:00
dbus * Revert to DBus 1.0.2; 1.1.20 is broken, it kills the X server when 2008-03-06 13:02:04 +00:00
dbus-glib dbus-glib: propagating glib 2008-02-02 20:42:13 +00:00
dclib * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
directfb * Fix a bunch of URLs. 2007-09-11 10:15:07 +00:00
enchant enchant: using selectVersion 2008-02-18 20:51:07 +00:00
exiv2 Added exiv2-0.15 library 2007-10-01 15:12:41 +00:00
expat Merged with trunk 2008-01-15 00:55:21 +00:00
facile Merged with trunk. 2007-11-16 21:05:15 +00:00
fcgi fcgi library added 2008-02-08 10:54:56 +00:00
ffmpeg * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
ffmpeg_svn_snapshot Ported ffmpeg_svn tarball link; fixes to iptables 2008-02-12 21:47:49 +00:00
fftw Added src to meta for builderDefs-based packages. 2008-03-02 18:49:31 +00:00
fltk merging trunk... 2007-12-08 15:21:03 +00:00
fontconfig * X11R7.2 and associated updates. 2007-02-26 16:32:27 +00:00
freealut * Added GemRB, a reimplementation of the Infinity Engine. 2007-05-14 21:47:11 +00:00
freeglut freeglut: gcc-4.2 related patch 2008-01-16 00:06:31 +00:00
freetype * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
fribidi * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
gamin gamin added 2008-01-28 19:41:55 +00:00
gd * Added libgd. 2007-09-21 20:43:43 +00:00
gdbm Add GDBM, a key/value database library. 2008-04-06 23:18:25 +00:00
gegl gegl added (needs recent glibc) 2008-04-04 20:57:09 +00:00
geos merging trunk... 2007-12-08 15:21:03 +00:00
gettext - 2008-02-22 03:06:12 +00:00
giflib Merged with trunk 2008-01-15 00:55:21 +00:00
glew Nix-expr style review 2008-01-31 10:41:04 +00:00
glib svn path=/nixpkgs/trunk/; revision=11461 2008-04-04 16:58:19 +00:00
glibc-2.5 * Updated various stdenv packages (grep, gawk, tar, cpio, findutils, 2007-11-19 17:39:19 +00:00
glibc-2.7 * Removed some unused files. 2008-04-08 10:44:06 +00:00
gmime * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
gmm kde shipped with a copy of this lib. They have removed it. I guess we need id nevertheless? 2008-04-21 15:20:49 +00:00
gmp Merged with trunk 2008-01-15 00:55:21 +00:00
gnet * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
gnutls GnuTLS 2.2.5 (security fix). 2008-05-21 13:17:14 +00:00
gpgme added gnupg-1.x compatibility symlinks to gnupg-2.x, removed gnupg2 attr 2008-02-18 20:52:59 +00:00
gsl Nix-expr style review 2008-01-31 10:41:04 +00:00
gssdp add gssdp 2008-02-26 20:47:30 +00:00
gstreamer - 2008-02-22 03:06:12 +00:00
gtk-libs add 2.12 GTK plus dependencies. I just took the latest of every dependency, so this might not be correct. Feel free to fix. 2008-04-12 18:48:48 +00:00
gtk-sharp-1 * "." -> "source". 2005-12-05 14:11:09 +00:00
gtk-sharp-2 * "." -> "source". 2005-12-05 14:11:09 +00:00
gtkmozembed-sharp * Copy even more files (in particular from losser.st-lab.cs.uu.nl, 2006-01-30 16:11:00 +00:00
gtksourceview-sharp * Copy even more files (in particular from losser.st-lab.cs.uu.nl, 2006-01-30 16:11:00 +00:00
gtkspell Added aspell 2007-05-13 14:22:24 +00:00
haskell X11 version 1.4.2, added xmobar a minimalistic status bar written in haskell (integrates fine with xmonad) 2008-04-15 20:03:25 +00:00
icu Some upgrades needed for kde4: 2007-08-08 13:20:18 +00:00
id3lib * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
ilbc ilbc and msilbc libraries added 2008-02-10 17:35:03 +00:00
ilmbase merging trunk... 2007-12-08 15:21:03 +00:00
imlib * gconf-editor and various dependencies. 2007-03-04 21:28:24 +00:00
imlib2 Added bzip2 to imlib2 2007-11-11 15:49:28 +00:00
indilib indilib added 2008-01-28 19:47:23 +00:00
iniparser iniparser library added 2008-01-28 19:45:19 +00:00
jasper Added JasPer JPEG 2000 library 2008-01-28 19:41:03 +00:00
java version update 2008-03-27 09:46:03 +00:00
kerberos force a build without X for now. This should be made an option...soon. 2008-03-02 22:12:27 +00:00
lablgtk * add unison 2007-08-10 08:21:31 +00:00
lcms * catamaran.labs.cs.uu.nl -> nix.cs.uu.nl. 2005-08-22 08:39:27 +00:00
lesstif * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
libaal * Reiser4 stuff. 2008-02-10 17:38:36 +00:00
libao Add mpg321, libao and libid3tag; upgrade libmad. 2008-02-11 21:02:38 +00:00
libarchive libarchive: 2.4.12 added 2008-02-18 20:52:40 +00:00
libassuan libassuan added 2008-01-28 19:43:37 +00:00
libavc1394 libavc1394: propagating libraw1394 2008-02-06 19:00:51 +00:00
libcaca Merged with trunk 2008-01-15 00:55:21 +00:00
libcdaudio * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
libcddb Add libcddb and GNU libcdio. 2008-03-05 09:10:23 +00:00
libcdio * Put back the longDescription. 2008-04-22 07:57:31 +00:00
libcm * Build metacity with compositing support. 2007-02-28 17:52:41 +00:00
libdaemon * ifplugd: program for monitoring the link status of 2007-08-06 18:45:53 +00:00
libdbi Added src to meta for builderDefs-based packages. 2008-03-02 18:49:31 +00:00
libdbi-drivers Added src to meta for builderDefs-based packages. 2008-03-02 18:49:31 +00:00
libdrm * X11R7.2 and associated updates. 2007-02-26 16:32:27 +00:00
libdv libdv: more flags 2008-02-06 19:00:15 +00:00
libdvdcss * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libdvdnav * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libdvdread * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libevent * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libexif Removed unused patches (libexif, libgphoto2) 2008-02-02 20:40:39 +00:00
libextractor Added src to meta for builderDefs-based packages. 2008-03-02 18:49:31 +00:00
libffi Add libffi, a foreign function interface library. 2008-04-09 07:40:48 +00:00
libgcrypt Added Shamir Secret Sharing Scheme and bmrsa. Fixed libgcrypt 2008-03-03 12:30:39 +00:00
libgpg-error Some upgrades needed for kde4: 2007-08-08 13:20:18 +00:00
libgphoto2 Removed unused patches (libexif, libgphoto2) 2008-02-02 20:40:39 +00:00
libgsf Merged with trunk. 2007-11-16 21:05:15 +00:00
libid3tag Add mpg321, libao and libid3tag; upgrade libmad. 2008-02-11 21:02:38 +00:00
libidn urkud asked to fix a broken meta.. 2007-11-11 17:20:06 +00:00
libiec61883 libiec61883: propagating libraw1394 2008-02-06 19:00:46 +00:00
libixp add wmii window manager + all dependencies. Interesting excercise... 2007-03-18 23:58:22 +00:00
libixp_for_wmii removed wmii includeUnpack hack having been used to support old and new setup script 2008-03-23 16:52:27 +00:00
libjingle * Merged most of the stdenv-updates branch. Some stuff didn't 2008-02-20 23:02:41 +00:00
libjpeg * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libjpeg-static * Build splashutils properly. 2006-11-25 23:41:53 +00:00
libksba Added libksba 2008-01-28 19:44:20 +00:00
libmad Add mpg321, libao and libid3tag; upgrade libmad. 2008-02-11 21:02:38 +00:00
libmcs * Added Audacious, a fork of beep-media-player (which doesn't seem to 2008-03-03 10:55:20 +00:00
libmicrohttpd add libmicrohttpd 2008-05-11 11:46:48 +00:00
libmowgli * Added Audacious, a fork of beep-media-player (which doesn't seem to 2008-03-03 10:55:20 +00:00
libmpcdec * Added Audacious, a fork of beep-media-player (which doesn't seem to 2008-03-03 10:55:20 +00:00
libmspack * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libnotify D-Bus splitted into two packages: dbus.libs and dbus.tools 2008-02-02 20:41:06 +00:00
libnova libnova added 2008-01-28 19:47:12 +00:00
libogg * Fixed some more URLs. 2007-09-11 11:15:37 +00:00
liboil update liboil to 0.3.13 (and add some (new) missing deps) 2008-03-10 20:13:44 +00:00
liboop Add GNU lsh, a GPL'd implementation of SSH, and `liboop', and event loop library. 2008-02-12 10:51:44 +00:00
libotr make libgcrypt propagated 2007-08-16 22:05:38 +00:00
libpcap Merged with trunk 2008-01-15 00:55:21 +00:00
libpng Merged with trunk 2008-01-15 00:55:21 +00:00
libraw1394 libraw1394: URL corrected 2008-02-18 20:53:11 +00:00
librsvg nixpkgs dir: nvidia and libsrvg 2007-05-28 14:10:46 +00:00
libsamplerate merging trunk... 2007-12-08 15:21:03 +00:00
libsexy Merged with trunk. 2007-11-16 21:05:15 +00:00
libsigcxx * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libsigsegv libsigsegv: shared 2008-02-10 17:41:29 +00:00
libsndfile * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libtheora Merged with trunk 2008-01-15 00:55:21 +00:00
libtiff * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
libunwind libunwind added 2008-01-28 19:45:30 +00:00
libusb * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
libvorbis Merged with trunk 2008-01-15 00:55:21 +00:00
libwmf Nix-expr style review 2008-01-31 10:41:04 +00:00
libwpd update to 0.8.14 (warning: triggers OOo rebuild :-P ) 2008-03-03 22:07:25 +00:00
libxcrypt * Add libxcrypt for Blowfish support in pam_unix2. 2006-12-11 02:35:05 +00:00
libxklavier libxklavier added 2008-02-18 20:53:36 +00:00
libxml2 Augment `libxml2' setup hook to add XSL stylesheets to XML catalogs. 2008-03-11 08:42:26 +00:00
libxslt libxslt: propagating libxml2 2008-02-10 17:41:40 +00:00
libzip Added libzip 2007-11-11 16:19:00 +00:00
log4cxx log4cxx: +boost 2008-02-18 20:51:56 +00:00
loudmouth loudmouth library added 2008-01-28 19:49:25 +00:00
lzo Added lzo library 2007-11-11 16:17:21 +00:00
martyr * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
mediastreamer Mediastreamer: compilable 2008-02-10 17:34:49 +00:00
mesa * Mesa 7.0.3. 2008-03-01 17:44:50 +00:00
mpeg2dec * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
mpfr Updated MPFR 2008-04-01 16:53:18 +00:00
mpich2 Add MPICH2, an implementation of the Message Passing Interface. 2008-02-21 16:17:43 +00:00
msilbc ilbc and msilbc libraries added 2008-02-10 17:35:03 +00:00
mysql-connector-odbc * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
ncurses - 2008-02-22 03:06:12 +00:00
ncurses-diet * Rewrite all URLs to GNU mirrors to mirror://gnu/. 2007-08-27 13:42:00 +00:00
neon * Subversion 1.4.3. 2007-01-25 18:09:13 +00:00
nss * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
openal * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
openalSoft openal-soft: 1.1.93 2008-01-28 19:40:43 +00:00
openbabel Openbabel added. There are some TODO's in its nix-expression. 2007-11-11 16:15:29 +00:00
openexr merging trunk... 2007-12-08 15:21:03 +00:00
openexr_ctl Nix-expr style review 2008-01-31 10:41:04 +00:00
openldap Added slapd to openldap 2007-10-12 20:30:19 +00:00
openssl Merged with trunk. 2007-11-16 21:05:15 +00:00
ortp ortp: 0.7.1 added (libjingle may need it) 2008-02-18 20:51:25 +00:00
pangoxsl * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
pcre * pcre: don't compile with C++ support when doing a dietlibc build. 2007-11-21 19:28:54 +00:00
poppler Added poppler and poppler-data 2007-11-11 16:00:51 +00:00
popt Merged with trunk 2008-01-15 00:55:21 +00:00
proj.4 Nix-expr style review 2008-01-31 10:41:04 +00:00
pth pth added 2008-01-28 19:43:03 +00:00
pysqlite * Fix a bunch of URLs. 2007-09-11 10:15:07 +00:00
qt-3 * Build Qt with GIF, Xcursor, Xshape support. 2007-03-26 18:15:32 +00:00
qt-4 updatet qt4 to 4.4.0 and cleaned up the nix expression a little bit, breaks a lot of stuff depending on qt4 I suppose ;-) 2008-05-10 09:09:56 +00:00
readline readline5: shared, using sha256 2008-02-10 17:42:02 +00:00
redland redland: more dependencies 2008-02-10 17:42:11 +00:00
rte * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
schroedinger update liboil to 0.3.13 (and add some (new) missing deps) 2008-03-10 20:13:44 +00:00
science/biology/ncbi-tools Added ncbi-tools 2008-06-06 19:42:00 +00:00
SDL * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
SDL_image added SDL_net, some minor modifications to SDL_image and SDL_mixer 2008-02-10 17:40:00 +00:00
SDL_mixer added SDL_net, some minor modifications to SDL_image and SDL_mixer 2008-02-10 17:40:00 +00:00
SDL_net added SDL_net, some minor modifications to SDL_image and SDL_mixer 2008-02-10 17:40:00 +00:00
SDL_ttf Nix-expr style review 2008-01-31 10:41:04 +00:00
slang * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
speex Merged with trunk 2008-01-15 00:55:21 +00:00
sqlite sqlite: 3.5.6 added 2008-02-10 17:41:58 +00:00
stlport * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
t1lib Merged with trunk 2008-01-15 00:55:21 +00:00
taglib * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
tapioca-qt telepathy stuff 2008-02-18 20:53:23 +00:00
telepathy-gabble Added some telepathy+tapioca stuff. 2008-01-28 19:49:44 +00:00
telepathy-glib Added some telepathy+tapioca stuff. 2008-01-28 19:49:44 +00:00
telepathy-qt telepathy stuff 2008-02-18 20:53:23 +00:00
tk Fixed wish in Tk 2008-02-10 17:38:12 +00:00
toolbuslib * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
unixODBC * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
wxGTK-2.6 * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
wxGTK-2.8 * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00
x264 x264 codec lib added 2008-05-22 00:18:45 +00:00
Xaw3d * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
xine-lib xine-lib 1.1.12 2008-04-25 21:49:25 +00:00
xlibs-wrapper * Fix xlibs-wrapper. 2006-12-28 01:19:15 +00:00
zlib * Reverted r6713, r6711, r4623, r3660, r2237. There rewrote fetchurl 2007-08-24 12:32:36 +00:00
zvbi * Rewrite all the SourceForge URLs to mirror://sourceforge/. 2007-08-27 13:01:33 +00:00