forked from mirrors/nixpkgs
ecd5886830
seeing it has no tests, use pythonImportsCheck in an attempt to detect total breakage, even though it's not intended to be used as an importable module
48 lines
1.1 KiB
Nix
48 lines
1.1 KiB
Nix
{ lib
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, fetchFromGitHub
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, python3Packages
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}:
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python3Packages.buildPythonApplication rec {
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pname = "truvari";
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version = "2.0.2";
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src = fetchFromGitHub {
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owner = "spiralgenetics";
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repo = "truvari";
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rev = "v${version}";
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sha256 = "0lp1wnldjv92k4ncga1h0icb0dpjsrx427vggg40x04a7kp9lwx0";
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};
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propagatedBuildInputs = with python3Packages; [
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pyvcf
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python-Levenshtein
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progressbar2
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pysam
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pyfaidx
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intervaltree
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pytabix
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acebinf
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bwapy
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joblib
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pandas
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];
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# no tests
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doCheck = false;
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pythonImportsCheck = [ "truvari" ];
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meta = with lib; {
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description = "Structural variant comparison tool for VCFs";
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homepage = "https://github.com/spiralgenetics/truvari";
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license = licenses.mit;
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maintainers = with maintainers; [ scalavision ];
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longDescription = ''
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Truvari is a benchmarking tool for comparison sets of SVs.
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It can calculate the recall, precision, and f-measure of a
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vcf from a given structural variant caller. The tool
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is created by Spiral Genetics.
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'';
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};
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}
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