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nixpkgs/pkgs/applications/science/biology/kallisto/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

31 lines
831 B
Nix

{ lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
stdenv.mkDerivation rec {
pname = "kallisto";
version = "0.46.2";
src = fetchFromGitHub {
repo = "kallisto";
owner = "pachterlab";
rev = "v${version}";
sha256 = "0m0r2820ca3rch99md1zzbgkilmlfkhdkpys2lfnb87qxmf1jnmb";
};
nativeBuildInputs = [ autoconf cmake ];
buildInputs = [ hdf5 zlib ];
cmakeFlags = [ "-DUSE_HDF5=ON" ];
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
enableParallelBuilding = false;
meta = with lib; {
description = "Program for quantifying abundances of transcripts from RNA-Seq data";
homepage = "https://pachterlab.github.io/kallisto";
license = licenses.bsd2;
platforms = platforms.linux;
maintainers = with maintainers; [ arcadio ];
};
}