forked from mirrors/nixpkgs
4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
42 lines
1.4 KiB
Nix
42 lines
1.4 KiB
Nix
{ lib, stdenv, fetchurl, cmake, zlib }:
|
|
|
|
stdenv.mkDerivation {
|
|
name = "diamond-0.8.36";
|
|
|
|
src = fetchurl {
|
|
url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz";
|
|
sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh";
|
|
};
|
|
|
|
patches = [
|
|
./diamond-0.8.36-no-warning.patch
|
|
];
|
|
|
|
nativeBuildInputs = [ cmake ];
|
|
buildInputs = [ zlib ];
|
|
|
|
meta = with lib; {
|
|
description = "Accelerated BLAST compatible local sequence aligner";
|
|
longDescription = ''
|
|
A sequence aligner for protein and translated DNA
|
|
searches and functions as a drop-in replacement for the NCBI BLAST
|
|
software tools. It is suitable for protein-protein search as well as
|
|
DNA-protein search on short reads and longer sequences including contigs
|
|
and assemblies, providing a speedup of BLAST ranging up to x20,000.
|
|
|
|
DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
|
|
|
|
If you use DIAMOND in published research, please cite
|
|
B. Buchfink, Xie C., D. Huson,
|
|
"Fast and sensitive protein alignment using DIAMOND",
|
|
Nature Methods 12, 59-60 (2015).
|
|
'';
|
|
homepage = "https://github.com/bbuchfink/diamond";
|
|
license = {
|
|
fullName = "University of Tuebingen, Benjamin Buchfink";
|
|
url = "https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING";
|
|
};
|
|
maintainers = [ maintainers.metabar ];
|
|
};
|
|
}
|