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nixpkgs/pkgs/applications/science/biology/diamond/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

42 lines
1.4 KiB
Nix

{ lib, stdenv, fetchurl, cmake, zlib }:
stdenv.mkDerivation {
name = "diamond-0.8.36";
src = fetchurl {
url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz";
sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh";
};
patches = [
./diamond-0.8.36-no-warning.patch
];
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ];
meta = with lib; {
description = "Accelerated BLAST compatible local sequence aligner";
longDescription = ''
A sequence aligner for protein and translated DNA
searches and functions as a drop-in replacement for the NCBI BLAST
software tools. It is suitable for protein-protein search as well as
DNA-protein search on short reads and longer sequences including contigs
and assemblies, providing a speedup of BLAST ranging up to x20,000.
DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
If you use DIAMOND in published research, please cite
B. Buchfink, Xie C., D. Huson,
"Fast and sensitive protein alignment using DIAMOND",
Nature Methods 12, 59-60 (2015).
'';
homepage = "https://github.com/bbuchfink/diamond";
license = {
fullName = "University of Tuebingen, Benjamin Buchfink";
url = "https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING";
};
maintainers = [ maintainers.metabar ];
};
}