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nixpkgs/pkgs/development/python-modules/scikit-bio/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

55 lines
1.1 KiB
Nix

{ lib, stdenv
, buildPythonPackage
, fetchPypi
, cython
, lockfile
, cachecontrol
, decorator
, ipython
, matplotlib
, natsort
, numpy
, pandas
, scipy
, hdmedians
, scikitlearn
, coverage
, python
, isPy3k
}:
buildPythonPackage rec {
version = "0.5.6";
pname = "scikit-bio";
disabled = !isPy3k;
src = fetchPypi {
inherit pname version;
sha256 = "48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea";
};
buildInputs = [ cython ];
checkInputs = [ coverage ];
propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikitlearn ];
# remove on when version > 0.5.4
postPatch = ''
sed -i "s/numpy >= 1.9.2, < 1.14.0/numpy/" setup.py
sed -i "s/pandas >= 0.19.2, < 0.23.0/pandas/" setup.py
'';
# cython package not included for tests
doCheck = false;
checkPhase = ''
${python.interpreter} -m skbio.test
'';
meta = with lib; {
homepage = "http://scikit-bio.org/";
description = "Data structures, algorithms and educational resources for bioinformatics";
license = licenses.bsd3;
maintainers = [ maintainers.costrouc ];
};
}