forked from mirrors/nixpkgs
4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
30 lines
752 B
Nix
30 lines
752 B
Nix
{lib, stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}:
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stdenv.mkDerivation rec {
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pname = "octopus";
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version = "0.7.0";
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src = fetchFromGitHub {
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owner = "luntergroup";
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repo = "octopus";
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rev = "v${version}";
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sha256 = "0y3g0xc3x3adbcmds6hh60023pfv1qrz6ak7jd88fg9vxi9bdrfb";
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};
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nativeBuildInputs = [ cmake pkg-config ];
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buildInputs = [ boost gmp htslib zlib lzma ];
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postInstall = ''
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mkdir $out/bin
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mv $out/octopus $out/bin
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'';
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meta = with lib; {
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description = "Bayesian haplotype-based mutation calling";
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license = licenses.mit;
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homepage = "https://github.com/luntergroup/octopus";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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