| .. |
|
ants
|
treewide: avoid use of lib.optional with list in inputs
|
2021-10-04 13:02:42 -04:00 |
|
aragorn
|
|
|
|
bayescan
|
|
|
|
bcftools
|
bcftools: 1.13 -> 1.14
|
2021-10-29 02:49:14 +00:00 |
|
bedops
|
bedops: 2.4.39 -> 2.4.40
|
2021-07-23 01:02:40 +00:00 |
|
bedtools
|
|
|
|
bftools
|
|
|
|
blast
|
blast: 2.11.0 -> 2.12.0
|
2021-09-15 15:33:44 +00:00 |
|
bowtie
|
bowtie: 1.3.0 -> 1.3.1
|
2021-09-15 07:35:44 +00:00 |
|
bowtie2
|
Merge pull request #111691 from jbedo/bowtie2
|
2021-08-07 04:03:47 +03:00 |
|
bppsuite
|
|
|
|
bwa
|
|
|
|
cd-hit
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
2021-08-02 20:05:00 +03:00 |
|
clustal-omega
|
|
|
|
cmtk
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
conglomerate
|
|
|
|
dcm2niix
|
dcm2niix: 1.0.20210317 -> 1.0.20211006
|
2021-10-29 09:34:20 +00:00 |
|
deeptools
|
|
|
|
delly
|
delly: 0.8.7 -> 0.9.1
|
2021-11-25 21:19:48 +11:00 |
|
diamond
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
ecopcr
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
eggnog-mapper
|
|
|
|
emboss
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
|
|
|
fastp
|
fastp: 0.23.1 -> 0.23.2
|
2021-12-02 08:03:17 +11:00 |
|
freebayes
|
|
|
|
genmap
|
genmap: init 1.3.0
|
2021-12-04 06:51:16 +11:00 |
|
hisat2
|
|
|
|
hmmer
|
hmmer: restrict platforms to x86_64
|
2021-11-20 19:17:57 +00:00 |
|
igv
|
|
|
|
inormalize
|
|
|
|
itsx
|
|
|
|
iv
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
kallisto
|
|
|
|
kent
|
|
|
|
kssd
|
|
|
|
last
|
last: 1179 -> 1256
|
2021-10-19 13:23:14 +11:00 |
|
lumpy
|
|
|
|
MACS2
|
|
|
|
macse
|
treewide: convert phases that contain ":" to dont* = true (#130500)
|
2021-07-18 23:42:48 +02:00 |
|
manta
|
|
|
|
megahit
|
|
|
|
meme-suite
|
|
|
|
messer-slim
|
|
|
|
migrate
|
|
|
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
minimap2: 2.17 -> 2.22
|
2021-08-14 15:55:35 +00:00 |
|
mni_autoreg
|
|
|
|
mosdepth
|
mosdepth: convert to buildNimPackage
|
2021-09-05 11:20:02 +02:00 |
|
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
|
2021-07-27 14:30:23 +02:00 |
|
mrtrix
|
mrtrix: 3.0.2 -> unstable-2021-11-25
|
2021-11-30 21:03:53 -08:00 |
|
muscle
|
|
|
|
N3
|
|
|
|
ncbi-tools
|
|
|
|
neuron
|
treewide: ensure pre/post phase hooks are strings
|
2021-08-20 19:08:42 -04:00 |
|
niftyreg
|
|
|
|
niftyseg
|
|
|
|
obitools
|
obitools3: removed useless python restriction
|
2021-11-08 07:51:48 +01:00 |
|
octopus
|
|
|
|
paml
|
|
|
|
picard-tools
|
picard-tools: 2.26.4 -> 2.26.6
|
2021-12-04 07:51:31 +11:00 |
|
platypus
|
|
|
|
plink-ng
|
|
|
|
poretools
|
|
|
|
prodigal
|
|
|
|
quast
|
|
|
|
raxml
|
|
|
|
sambamba
|
sambamba 0.8.0 -> 0.8.1
|
2021-08-31 12:37:49 +03:00 |
|
samblaster
|
|
|
|
samtools
|
samtools: pull upstream fix for ncurses-6.3
|
2021-11-26 13:02:05 +00:00 |
|
seaview
|
seaview: 5.0.4 -> 5.0.5
|
2021-12-12 15:59:16 +00:00 |
|
snpeff
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
spades
|
SPAdes: 3.15.2 -> 3.15.3
|
2021-08-15 11:12:42 +03:00 |
|
stacks
|
Merge pull request #135516 from bzizou/stacks
|
2021-08-26 03:50:48 +02:00 |
|
star
|
star: 2.7.8a -> 2.7.9a
|
2021-09-24 10:37:28 +08:00 |
|
strelka
|
|
|
|
subread
|
subread: init 2.0.3
|
2021-12-14 13:30:23 +11:00 |
|
sumatools
|
|
|
|
svaba
|
|
|
|
tebreak
|
|
|
|
trimal
|
|
|
|
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
2021-06-15 22:14:20 +02:00 |
|
varscan
|
varscan: deprecate phases
|
2021-08-03 00:04:16 +02:00 |
|
vcftools
|
|
|
|
whisper
|
|
|
|
xenomapper
|
|
|
