forked from mirrors/nixpkgs
3862e92e01
- propagate hdf5 and netcdf since essentially every reverse dep of libminc depends on these - switch to default HDF5 from 1.8.x series - one resolved test failure and one new error (less concerning than before)
46 lines
1.2 KiB
Nix
46 lines
1.2 KiB
Nix
{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
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stdenv.mkDerivation rec {
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pname = "libminc";
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version = "unstable-2020-07-17";
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owner = "BIC-MNI";
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src = fetchFromGitHub {
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inherit owner;
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repo = pname;
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rev = "ffb5fb234a852ea7e8da8bb2b3b49f67acbe56ca";
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sha256 = "0yr4ksghpvxh9zg0a4p7hvln3qirsi08plvjp5kxx2qiyj96zsdm";
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};
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postPatch = ''
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patchShebangs .
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'';
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib nifticlib ];
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propagatedBuildInputs = [ netcdf hdf5 ];
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cmakeFlags = [
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"-DLIBMINC_MINC1_SUPPORT=ON"
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"-DLIBMINC_BUILD_SHARED_LIBS=ON"
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"-DLIBMINC_USE_SYSTEM_NIFTI=ON"
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];
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doCheck = !stdenv.isDarwin;
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checkPhase = ''
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export LD_LIBRARY_PATH="$(pwd)" # see #22060
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ctest -j1 -E 'ezminc_rw_test' --output-on-failure
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# -j1: see https://github.com/BIC-MNI/libminc/issues/110
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# ezminc_rw_test: can't find libminc_io.so.5.2.0
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'';
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meta = with stdenv.lib; {
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homepage = "https://github.com/BIC-MNI/libminc";
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description = "Medical imaging library based on HDF5";
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maintainers = with maintainers; [ bcdarwin ];
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platforms = platforms.unix;
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license = licenses.free;
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};
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}
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