..
ants
ants: use itk 4.x
2019-09-13 11:54:21 +02:00
aragorn
bayescan
bayescan: init at 2.1 ( #68191 )
2020-01-09 12:38:53 -05:00
bcftools
bcftools: 1.9 -> 1.10.2
2019-12-22 20:00:29 -08:00
bedtools
bedtools: 2.29.1 -> 2.29.2
2019-12-18 10:39:25 +11:00
bftools
bftools: 5.9.2 -> 6.3.0
2019-12-06 02:11:00 -08:00
blast
blast: init at 2.10.0 ( #61430 )
2020-01-07 20:14:18 +01:00
bowtie2
bwa
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix
dcm2niix: 1.0.20190410 -> 1.0.20190902
2019-10-22 16:31:19 -07:00
deeptools
deeptools: init at 3.3.1
2019-11-04 02:42:36 -08:00
delly
delly: init at 0.8.1 ( #70871 )
2019-10-10 22:08:45 -04:00
diamond
ecopcr
eggnog-mapper
treewide: remove redundant quotes
2019-09-08 23:38:31 +00:00
emboss
est-sfs
exonerate
EZminc
EZminc: 2017-08-29 -> 2019-07-25; mark unbroken
2019-10-26 09:55:30 -07:00
freebayes
freebayes: 2017-08-23 -> 1.3.1 (2019-06-03)
2019-11-20 09:10:31 -08:00
hisat2
hmmer
hmmer: 3.2.1 -> 3.3
2019-11-27 18:40:23 -08:00
igv
maintainer: mimadrid: update github username and personal data
2019-09-14 12:15:46 +02:00
inormalize
itsx
iv
kallisto
kallisto: 0.46.0 -> 0.46.1 ( #74430 )
2019-11-30 21:12:54 +01:00
kssd
kssd: init at 1.0
2019-12-08 16:48:59 +01:00
last
last: 1042 -> 1045
2020-01-06 11:46:28 -08:00
macse
macse: init at 2.03
2019-09-24 08:24:07 +02:00
manta
manta: init 1.6.0
2020-01-24 02:02:19 -08:00
megahit
megahit: 1.1.4 -> 1.2.9
2019-11-02 15:53:57 +01:00
messer-slim
migrate
minc-tools
minc-widgets
minia
minia: init at 3.2.1
2019-12-20 11:27:04 +11:00
minimap2
mni_autoreg
mosdepth
mrbayes
muscle
N3
ncbi-tools
neuron
niftyreg
niftyreg: fix build with gcc9
2019-11-03 14:43:37 +01:00
niftyseg
nifticlib and niftseg: change platform from linux to unix since these build on OSX
2019-11-14 21:25:10 -05:00
octopus
paml
paml: 4.9i -> 4.9j
2019-12-01 18:43:58 +01:00
picard-tools
picard-tools: 2.21.3 -> 2.21.6
2020-01-22 10:12:28 +00:00
platypus
plink
plink-ng
poretools
treewide: fix redirected urls
2020-01-22 11:26:22 +01:00
prodigal
raxml
samtools
samtools: 1.9 -> 1.10
2020-01-19 13:13:01 -08:00
seaview
seaview: 4.7 -> 5.0
2020-01-30 08:26:52 +00:00
snpeff
somatic-sniper
sortmerna
spades
Revert "Revert "Merge master into staging-next""
2020-02-05 19:41:25 +01:00
stacks
star
star: 2.7.2b -> 2.7.3a
2019-11-03 10:23:05 +01:00
strelka
strelka: fix build w/ gcc9
2019-12-30 03:18:19 +01:00
sumatools
treewide: replace make/build/configure/patchFlags with nix lists
2019-12-30 12:58:11 +01:00
svaba
svaba: init at 1.1.0
2019-12-08 14:51:05 +01:00
tebreak
tebreak: init at 1.0
2019-12-29 17:16:10 +11:00
trimal
truvari
truvari: init at 1.3.2 ( #70877 )
2019-10-24 17:06:42 -04:00
varscan
vcftools
xenomapper
python.pkgs wide: fix problematic urls
2020-01-10 21:02:12 -08:00
419bc0a4cd