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Jonas Heinrich 8508d5decf
Merge pull request #183724 from r-ryantm/auto-update/picard-tools
picard-tools: 2.26.11 -> 2.27.4
2022-08-21 10:03:42 +02:00
..
angsd
ants
aragorn
astral treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
bayescan bayescan: fix the build 2022-05-13 12:00:08 +02:00
bcftools
bedops bedops: 2.4.40 -> 2.4.41 2022-07-19 09:09:52 +10:00
bedtools
bftools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
blast blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
bowtie bowtie: fix build on case insensitive file systems 2022-05-11 03:20:03 -05:00
bowtie2
bppsuite
bwa bwa: pull upstream fix for -fno-common tollchains 2022-05-08 08:56:43 +01:00
cd-hit
clustal-omega treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
cmtk treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
conglomerate
dcm2niix dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
deeptools
delly delly: 1.0.3 -> 1.1.3 2022-08-05 08:58:15 +00:00
diamond maintainers: remove metabar 2022-06-29 00:52:13 +02:00
dssp dssp: init at 4.0.5 2022-07-19 12:17:34 +09:00
ecopcr maintainers: remove metabar 2022-06-29 00:52:13 +02:00
eggnog-mapper
emboss
est-sfs
exonerate
EZminc ezminc: mark broken 2022-05-17 10:24:07 -07:00
fastp
febio-studio
flywheel-cli treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
freebayes freebayes: add -fcommon workaround 2022-05-14 13:19:17 +01:00
genmap
hisat2
hmmer
igv igv: 2.8.13 -> 2.13.2 2022-08-07 17:53:06 +02:00
inormalize
itsx
iv
kallisto
kent
kssd kssd: pull upstream fix for -fno-common tollchains 2022-05-21 11:22:53 +01:00
last last: 1268 -> 1406 2022-07-31 16:58:20 +00:00
MACS2 MACS2: mark broken 2022-06-06 11:46:22 -07:00
macse treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
mafft mafft: 7.490 -> 7.505 2022-07-31 20:32:57 +00:00
manta
megahit Static build for megahit 2022-05-04 02:13:31 +02:00
meme-suite
messer-slim messer-slim: 3.7.1 -> 4.0 2022-08-14 14:11:37 +00:00
migrate treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
minc-tools
minc-widgets
minia
minimap2
mni_autoreg mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20 2022-07-26 16:03:12 -04:00
mosdepth
mrbayes
mrtrix treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
muscle treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
N3
neuron treewide/python-modules: add sourceProvenance for several packages 2022-06-20 09:43:10 +02:00
niftyreg
niftyseg
obitools
octopus
paml paml: add -fcommon workaround 2022-05-22 20:23:12 +01:00
picard-tools picard-tools: 2.26.11 -> 2.27.4 2022-07-29 16:12:10 +00:00
platypus
plink-ng treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
poretools
prodigal
quast treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
raxml
repseek
sambamba
samblaster
samtools samtools: Fix cross-compilation 2022-08-02 17:52:50 +02:00
seaview
snpeff treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
somatic-sniper
sortmerna
spades treewide: fix platforms 2022-08-01 18:33:27 +02:00
stacks
star
strelka
subread treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
sumatools
svaba Merge pull request #175259 from trofi/workaround-fno-common-for-svaba 2022-06-03 05:59:16 +00:00
tebreak treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
trimal
truvari
varscan treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
vcftools
whisper treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
xenomapper