forked from mirrors/nixpkgs
f64a78e3a3
* add myself as maintainer * update homepage * incorporate minor patches * add working tests
92 lines
2 KiB
Nix
92 lines
2 KiB
Nix
{ lib
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, fetchPypi
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, fetchurl
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, fetchpatch
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, buildPythonPackage
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, pythonOlder
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, python
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, bzip2
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, c-blosc
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, cython
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, hdf5
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, lzo
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, numpy
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, numexpr
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, setuptools
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# Test inputs
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, pytestCheckHook
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}:
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buildPythonPackage rec {
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pname = "tables";
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version = "3.6.1";
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disabled = pythonOlder "3.5";
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src = fetchPypi {
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inherit pname version;
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sha256 = "0j8vnxh2m5n0cyk9z3ndcj5n1zj5rdxgc1gb78bqlyn2lyw75aa9";
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};
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nativeBuildInputs = [ cython ];
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buildInputs = [
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bzip2
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c-blosc
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hdf5
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lzo
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];
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propagatedBuildInputs = [
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numpy
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numexpr
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setuptools # uses pkg_resources at runtime
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];
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patches = [
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(fetchpatch {
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# Needed for numpy >= 1.20.0
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name = "tables-pr-862-use-lowercase-numpy-dtypes.patch";
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url = "https://github.com/PyTables/PyTables/commit/93a3272b8fe754095637628b4d312400e24ae654.patch";
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sha256 = "00czgxnm1dxp9763va9xw1nc7dd7kxh9hjcg9klim52519hkbhi4";
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})
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];
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# When doing `make distclean`, ignore docs
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postPatch = ''
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substituteInPlace Makefile --replace "src doc" "src"
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# Force test suite to error when unittest runner fails
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substituteInPlace tables/tests/test_suite.py \
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--replace "return 0" "assert result.wasSuccessful(); return 0" \
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--replace "return 1" "assert result.wasSuccessful(); return 1"
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'';
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# Regenerate C code with Cython
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preBuild = ''
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make distclean
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'';
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setupPyBuildFlags = [
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"--hdf5=${lib.getDev hdf5}"
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"--lzo=${lib.getDev lzo}"
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"--bzip2=${lib.getDev bzip2}"
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"--blosc=${lib.getDev c-blosc}"
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];
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checkInputs = [ pytestCheckHook ];
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preCheck = ''
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cd ..
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'';
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# Runs the test suite as one single test via unittest. The whole "heavy" test suite supposedly takes ~5 hours to run.
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pytestFlagsArray = [
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"--pyargs"
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"tables.tests.test_suite"
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];
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pythonImportsCheck = [ "tables" ];
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meta = with lib; {
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description = "Hierarchical datasets for Python";
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homepage = "https://www.pytables.org/";
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license = licenses.bsd2;
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maintainers = with maintainers; [ drewrisinger ];
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};
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}
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