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ants ants: unbreak on Darwin 2020-12-01 14:17:54 -05:00
aragorn aragorn: fix build on darwin 2020-09-23 20:45:21 -07:00
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools bcftools: 1.10.2 -> 1.11 2020-09-24 18:53:07 +00:00
bedtools treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
bftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
blast treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bowtie bowtie: init at at 1.3.0 2021-01-02 19:46:59 +01:00
bowtie2 bowtie2: 2.3.5.1 -> 2.4.2 2021-01-02 22:18:32 +01:00
bppsuite bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
bwa bwa: expand supported platforms 2020-11-30 09:46:51 +11:00
cd-hit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
clustal-omega treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cmtk treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
conglomerate conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
dcm2niix treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
deeptools deeptools: Fix tests 2020-11-25 21:36:37 +01:00
delly delly: 0.8.5 -> 0.8.6 2020-12-14 09:55:57 +11:00
diamond treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
ecopcr treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
eggnog-mapper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
emboss emboss: fix license 2020-06-26 11:05:24 +02:00
est-sfs treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
exonerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
EZminc EZminc: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
fastp fastp: init 0.20.1 2021-01-07 18:24:19 +11:00
freebayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hisat2 hisat2: 2.1.0 -> 2.2.1 2020-08-16 13:30:53 +00:00
hmmer hmmer: 3.3.1 -> 3.3.2 2020-12-02 09:00:15 +00:00
igv igv: 2.8.12 -> 2.8.13 2020-11-28 02:18:00 +00:00
inormalize inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
itsx itsx: enable on darwin 2020-07-28 13:48:55 -05:00
iv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
kallisto treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
kent kent: init at 404 2020-10-01 19:50:37 +02:00
kssd kssd: 1.0 -> 1.1 2020-08-14 15:06:11 +00:00
last last: 1145 -> 1170 2021-01-05 10:29:31 +11:00
lumpy lumpy: 0.3.0 -> 0.3.1 2020-10-30 01:28:00 +01:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
messer-slim treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
migrate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-tools minc_tools: unstable-2019-12-04 -> unstable-2020-07-25 2020-10-06 15:31:14 -04:00
minc-widgets
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mni_autoreg mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
mosdepth Merge pull request #98363 from jbedo/mosdepth 2020-11-25 23:55:47 +01:00
mrbayes mrbayes: fix license 2020-06-26 11:06:35 +02:00
mrtrix mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
muscle treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
N3 n3: 2017-09-18 -> 2018-08-09 2020-10-06 15:31:16 -04:00
ncbi-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
neuron treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyseg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
obitools init at 3.0.0-beta14 2020-04-24 11:20:14 +02:00
octopus octopus-caller: 0.6.3 -> 0.7.0 2020-09-22 08:43:04 +10:00
paml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
picard-tools picard-tools: 2.23.8 -> 2.23.9 2020-12-10 23:06:36 +00:00
platypus treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink-ng treewide: use blas and lapack 2020-04-17 16:24:09 -05:00
poretools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
prodigal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
quast Quast: init at 5.0.2 2020-04-24 10:11:54 +02:00
raxml raxml: cleanup 2021-01-04 11:02:16 +01:00
sambamba sambamba: init 0.7.1 2020-07-05 09:10:21 +10:00
samblaster samblaster: 0.1.24 -> 0.1.26 2020-11-12 01:43:02 +00:00
samtools samtools: 1.10 -> 1.11 2020-10-29 18:27:22 +01:00
seaview seaview: 5.0.2 -> 5.0.4 2020-07-07 13:30:35 +00:00
snpeff treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
somatic-sniper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sortmerna sortmerna: 3.0.3 -> 4.2.0 2020-07-18 18:06:23 +02:00
spades SPAdes: add python dependency 2020-12-21 08:29:57 +11:00
stacks stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
star star: 2.7.5c -> 2.7.6a 2020-11-23 20:40:05 +01:00
strelka treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sumatools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: Fix tests 2020-11-25 21:36:38 +01:00
trimal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
truvari truvari: 1.3.4 -> 2.0.2, fixing build 2020-09-20 12:25:17 +01:00
varscan varscan: 2.4.2 -> 2.4.4 2021-01-05 10:55:28 +11:00
vcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
whisper whisper: init at 2.0.1 2020-07-06 18:59:45 +10:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00