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nixpkgs/pkgs/applications/science/biology
2021-01-20 10:53:10 +10:00
..
ants treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
aragorn treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bayescan treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
bcftools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bedtools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bftools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
blast treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bowtie treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bowtie2 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bppsuite bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
bwa treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
cd-hit cd-hit: remove non-existent package 2021-01-19 01:16:25 -08:00
clustal-omega treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
cmtk treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
conglomerate treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
dcm2niix treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
deeptools deeptools: Fix tests 2020-11-25 21:36:37 +01:00
delly delly: 0.8.6 -> 0.8.7 2021-01-18 14:22:30 +00:00
diamond treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
ecopcr ecopcr: use spaces for indentation 2021-01-20 10:53:10 +10:00
eggnog-mapper treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
emboss treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
est-sfs treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
exonerate treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
EZminc treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
fastp treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
freebayes treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
hisat2 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
hmmer treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
igv treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
inormalize treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
itsx treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
iv treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
kallisto treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
kent treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
kssd treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
last treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
lumpy treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
macse treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
manta treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
megahit treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
messer-slim treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
migrate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-tools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
minc-widgets treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
minia treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
minimap2 treewide: editorconfig fixes 2021-01-20 09:11:11 +10:00
mni_autoreg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mosdepth treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mrbayes treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mrtrix mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
muscle treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
N3 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
ncbi-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
neuron treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
niftyreg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
niftyseg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
obitools treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
octopus treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
paml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
picard-tools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
platypus treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
plink-ng treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
poretools treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
prodigal treewide: editorconfig fixes 2021-01-20 09:11:11 +10:00
quast treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
raxml treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
sambamba treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
samblaster treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
samtools treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
seaview treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
snpeff treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
somatic-sniper treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
sortmerna treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
spades treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
stacks treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
star treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
strelka treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
sumatools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
svaba treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
tebreak treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
trimal treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
truvari truvari: 1.3.4 -> 2.0.2, fixing build 2020-09-20 12:25:17 +01:00
varscan treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
vcftools treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
whisper treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00