| .. |
|
angsd
|
angsd: 0.938 -> 0.940
|
2022-10-14 14:50:26 +00:00 |
|
ants
|
ants: 2.4.3 -> 2.4.4
|
2023-05-02 12:29:21 -04:00 |
|
aragorn
|
aragorn: fix format
|
2023-06-08 18:42:29 +09:00 |
|
astral
|
|
|
|
bayescan
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
bcftools
|
bcftools: 1.16 -> 1.17
|
2023-02-25 23:02:27 +00:00 |
|
bedops
|
bedops: fix build on darwin
|
2023-04-24 22:11:47 +09:00 |
|
bedtools
|
bedtools: 2.30.0 -> 2.31.0
|
2023-04-29 03:05:55 +00:00 |
|
bftools
|
|
|
|
blast
|
blast: 2.13.0 -> 2.14.0
|
2023-05-26 00:23:49 +00:00 |
|
bowtie
|
treewide:replace http by https when https is a permanent redirection
|
2023-02-19 21:47:59 +01:00 |
|
bowtie2
|
bowtie2: 2.4.5 -> 2.5.1
|
2023-01-21 21:19:00 +00:00 |
|
bppsuite
|
|
|
|
bwa
|
bwa: add runHook
|
2023-05-15 16:13:49 +09:00 |
|
cd-hit
|
|
|
|
clustal-omega
|
|
|
|
cmtk
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
conglomerate
|
|
|
|
dcm2niix
|
treewide: Rename libyamlcpp* to yaml-cpp*
|
2023-01-31 16:22:54 +01:00 |
|
deeptools
|
treewide: switch to nativeCheckInputs
|
2023-01-21 12:00:00 +00:00 |
|
delly
|
delly: 1.1.5 -> 1.1.6
|
2022-11-08 18:21:37 +00:00 |
|
diamond
|
diamond: 2.1.6 -> 2.1.7
|
2023-06-03 08:46:43 +00:00 |
|
dssp
|
dssp: 4.0.5 -> 4.2.2.1
|
2023-04-14 11:35:48 +09:00 |
|
ecopcr
|
ecopcr: 0.8.0 -> 1.0.1
|
2022-12-08 04:35:53 +01:00 |
|
eggnog-mapper
|
eggnog-mapper: 2.1.9 -> 2.1.10
|
2023-02-11 08:43:59 +00:00 |
|
emboss
|
treewide: replace http by https when https is a permanent redirection
|
2023-01-22 02:46:49 +01:00 |
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
EZminc: itk4 -> itk (formally; package is broken)
|
2022-09-04 13:36:24 -04:00 |
|
fastp
|
fastp: 0.23.3 -> 0.23.4
|
2023-06-04 03:21:21 +00:00 |
|
febio-studio
|
treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4
|
2023-03-13 16:42:22 -06:00 |
|
flywheel-cli
|
|
|
|
freebayes
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
gatk
|
gatk: 4.3.0.0 -> 4.4.0.0
|
2023-03-18 01:10:14 +00:00 |
|
genmap
|
treewide: switch to nativeCheckInputs
|
2023-01-21 12:00:00 +00:00 |
|
hh-suite
|
hh-suite: init at 3.3.0
|
2023-04-19 10:32:35 +09:00 |
|
hisat2
|
|
|
|
hmmer
|
|
|
|
igv
|
igv: 2.16.0 -> 2.16.1
|
2023-05-31 13:33:15 +00:00 |
|
inormalize
|
inormalize/minc-widgets/gimp-plugins: use pname & version
|
2023-02-12 22:21:44 +01:00 |
|
iqtree
|
iqtree: 2.2.2.4 -> 2.2.2.6
|
2023-05-30 01:13:17 +00:00 |
|
itsx
|
|
|
|
iv
|
|
|
|
jbrowse
|
jbrowse: init at 2.5.0
|
2023-05-12 11:24:26 -07:00 |
|
kallisto
|
|
|
|
kent
|
kent: package headers too.
|
2023-05-06 19:48:14 +02:00 |
|
kssd
|
|
|
|
last
|
last: 1447 -> 1453
|
2023-04-03 08:38:27 +10:00 |
|
MACS2
|
treewide/applications: use top-level fetchPypi
|
2023-05-25 10:51:30 -04:00 |
|
macse
|
|
|
|
mafft
|
mafft: 7.515 -> 7.520
|
2023-04-12 13:28:24 +09:00 |
|
manta
|
|
|
|
megahit
|
treewide: optional -> optionals where the argument is a list
|
2022-10-10 15:40:21 +03:00 |
|
meme-suite
|
pkgs.applications: remove unused args
|
2022-10-12 16:00:16 +02:00 |
|
messer-slim
|
messer-slim: 4.0 -> 4.0.1
|
2022-09-15 22:25:51 +00:00 |
|
migrate
|
|
|
|
minc-tools
|
|
|
|
minc-widgets
|
inormalize/minc-widgets/gimp-plugins: use pname & version
|
2023-02-12 22:21:44 +01:00 |
|
minia
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
minimap2
|
minimap2: 2.25 -> 2.26
|
2023-05-03 19:38:48 +00:00 |
|
mmseqs2
|
mmseqs2: init at 14-7e284
|
2022-10-31 23:49:10 +09:00 |
|
mni_autoreg
|
|
|
|
mosdepth
|
|
|
|
mrbayes
|
|
|
|
mrtrix
|
treewide: switch to nativeCheckInputs
|
2023-01-21 12:00:00 +00:00 |
|
muscle
|
muscle: fix pname
|
2023-01-28 04:20:00 +00:00 |
|
N3
|
|
|
|
nest
|
nest: specify license
|
2023-03-18 11:23:52 +01:00 |
|
neuron
|
treewide: fix lints
|
2023-03-11 00:55:17 +02:00 |
|
niftyreg
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
niftyseg
|
|
|
|
obitools
|
|
|
|
octopus
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
paml
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
picard-tools
|
picard-tools: 2.27.5 -> 3.0.0
|
2023-03-01 14:43:38 +00:00 |
|
platypus
|
|
|
|
plink-ng
|
treewide: use optionalString
|
2023-02-13 21:52:34 +01:00 |
|
poretools
|
|
|
|
prodigal
|
|
|
|
quast
|
treewide: python{ => .pythonForBuild}.interpreter
|
2023-02-26 20:26:17 +00:00 |
|
raxml
|
|
|
|
repseek
|
|
|
|
sambamba
|
sambamba: 0.8.2 -> 1.0.0
|
2023-01-22 13:54:41 +00:00 |
|
samblaster
|
|
|
|
samtools
|
Samtools: 1.13 -> 1.17
|
2023-04-12 12:00:25 +02:00 |
|
seaview
|
treewide:replace http by https when https is a permanent redirection
|
2023-02-19 21:47:59 +01:00 |
|
seqkit
|
seqkit: 2.3.1 -> 2.4.0
|
2023-03-21 10:45:22 +00:00 |
|
seqtk
|
seqtk: 1.3 -> 1.4
|
2023-05-28 06:48:51 +00:00 |
|
snpeff
|
treewide: replace http by https when https is a permanent redirection
|
2023-01-22 02:46:49 +01:00 |
|
somatic-sniper
|
|
|
|
sortmerna
|
pkgs.applications: remove unused args
|
2022-10-12 16:00:16 +02:00 |
|
spades
|
Merge pull request #184694 from r-ryantm/auto-update/SPAdes
|
2022-08-23 20:21:42 +02:00 |
|
sratoolkit
|
sratoolkit: init at 2.11.3
|
2022-11-21 20:27:28 +01:00 |
|
stacks
|
stacks: 2.60 -> 2.62
|
2023-02-06 21:36:49 +01:00 |
|
star
|
star: 2.7.10a -> 2.7.10b
|
2023-01-14 06:06:52 +00:00 |
|
strelka
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
subread
|
subread: 2.0.5 -> 2.0.6
|
2023-05-10 22:30:35 +10:00 |
|
sumatools
|
|
|
|
svaba
|
treewide: move NIX_CFLAGS_COMPILE to the env attrset
|
2023-02-22 21:23:04 +02:00 |
|
tandem-aligner
|
tandem-aligner: add changelog to meta
|
2023-04-19 21:23:21 +09:00 |
|
tebreak
|
|
|
|
treemix
|
treemix: init at 1.13
|
2022-09-05 06:55:03 +02:00 |
|
trf
|
trf: init at 4.09.1
|
2023-03-19 22:25:42 +09:00 |
|
trimal
|
|
|
|
truvari
|
truvari: add patches to fix truvari anno
|
2023-05-15 10:01:38 +09:00 |
|
varscan
|
varscan: 2.4.5 -> 2.4.6
|
2023-04-05 14:55:31 +00:00 |
|
vcftools
|
treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
|
2022-09-26 17:53:26 +03:00 |
|
veryfasttree
|
veryfasttree: fix pname
|
2023-01-28 04:20:00 +00:00 |
|
whisper
|
|
|
|
xenomapper
|
|
|
