forked from mirrors/nixpkgs
146 lines
4.6 KiB
Nix
146 lines
4.6 KiB
Nix
{ nixpkgs
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, withDoc ? false
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}:
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let
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inherit (nixpkgs) fetchpatch fetchurl symlinkJoin callPackage nodePackages;
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# https://trac.sagemath.org/ticket/15980 for tracking of python3 support
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python = nixpkgs.python2.override {
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packageOverrides = self: super: {
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# python packages that appear unmaintained and were not accepted into the nixpkgs
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# tree because of that. These packages are only dependencies of the more-or-less
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# deprecated sagenb. However sagenb is still a default dependency and the doctests
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# depend on it.
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# See https://github.com/NixOS/nixpkgs/pull/38787 for a discussion.
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flask-oldsessions = self.callPackage ./flask-oldsessions.nix {};
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flask-openid = self.callPackage ./flask-openid.nix {};
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python-openid = self.callPackage ./python-openid.nix {};
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pybrial = self.callPackage ./pybrial.nix {};
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sagelib = self.callPackage ./sagelib.nix {
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inherit flint ecl arb;
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inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
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linbox = nixpkgs.linbox.override { withSage = true; };
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};
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sagenb = self.callPackage ./sagenb.nix {
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mathjax = nodePackages.mathjax;
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};
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sagedoc = self.callPackage ./sagedoc.nix {
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inherit sage-src;
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};
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env-locations = self.callPackage ./env-locations.nix {
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inherit pari_data ecl;
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inherit singular;
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three = nodePackages.three;
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mathjax = nodePackages.mathjax;
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};
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sage-env = self.callPackage ./sage-env.nix {
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inherit sage-src python rWrapper openblas-cblas-pc ecl singular palp flint pynac pythonEnv;
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pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
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};
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sage-with-env = self.callPackage ./sage-with-env.nix {
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inherit pythonEnv;
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inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
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pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
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three = nodePackages.three;
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};
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sage = self.callPackage ./sage.nix { };
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sage-wrapper = self.callPackage ./sage-wrapper.nix {
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inherit sage-src withDoc;
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};
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};
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};
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openblas-blas-pc = callPackage ./openblas-pc.nix { name = "blas"; };
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openblas-cblas-pc = callPackage ./openblas-pc.nix { name = "cblas"; };
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openblas-lapack-pc = callPackage ./openblas-pc.nix { name = "lapack"; };
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sage-src = callPackage ./sage-src.nix {};
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pythonRuntimeDeps = with python.pkgs; [
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sagelib
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pybrial
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sagenb
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cvxopt
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networkx
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service-identity
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psutil
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sympy
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fpylll
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matplotlib
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scipy
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ipywidgets
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rpy2
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sphinx
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typing
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pillow
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];
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pythonEnv = python.buildEnv.override {
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extraLibs = pythonRuntimeDeps;
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ignoreCollisions = true;
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} // { extraLibs = pythonRuntimeDeps; }; # make the libs accessible
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# needs to be rWrapper, standard "R" doesn't include default packages
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rWrapper = nixpkgs.rWrapper.override {
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# https://trac.sagemath.org/ticket/25674
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R = nixpkgs.R.overrideAttrs (attrs: rec {
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name = "R-3.4.4";
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src = fetchurl {
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url = "http://cran.r-project.org/src/base/R-3/${name}.tar.gz";
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sha256 = "0dq3jsnwsb5j3fhl0wi3p5ycv8avf8s5j1y4ap3d2mkjmcppvsdk";
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};
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});
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};
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arb = nixpkgs.arb.override { inherit flint; };
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singular = nixpkgs.singular.override { inherit flint; };
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# *not* to confuse with the python package "pynac"
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pynac = nixpkgs.pynac.override { inherit singular flint; };
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# With openblas (64 bit), the tests fail the same way as when sage is build with
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# openblas instead of openblasCompat. Apparently other packages somehow use flints
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# blas when it is available. Alternative would be to override flint to use
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# openblasCompat.
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flint = nixpkgs.flint.override { withBlas = false; };
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# Multiple palp dimensions need to be available and sage expects them all to be
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# in the same folder.
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palp = symlinkJoin {
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name = "palp-${nixpkgs.palp.version}";
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paths = [
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(nixpkgs.palp.override { dimensions = 4; doSymlink = false; })
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(nixpkgs.palp.override { dimensions = 5; doSymlink = false; })
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(nixpkgs.palp.override { dimensions = 6; doSymlink = true; })
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(nixpkgs.palp.override { dimensions = 11; doSymlink = false; })
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];
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};
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# Sage expects those in the same directory.
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pari_data = symlinkJoin {
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name = "pari_data";
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paths = with nixpkgs; [
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pari-galdata
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pari-seadata-small
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];
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};
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# https://trac.sagemath.org/ticket/22191
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ecl = nixpkgs.ecl_16_1_2;
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in
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python.pkgs.sage-wrapper // {
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doc = python.pkgs.sagedoc;
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lib = python.pkgs.sagelib;
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}
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