forked from mirrors/nixpkgs
6dba41fbcb
Use the attribute mpi to provide a system wide default MPI implementation. The default is openmpi (as before). This now allows for overriding the MPI implentation by using the overlay mechanism. Build all packages with mpich instead of the default openmpi can now be achived like this: self: super: { mpi = super.mpich; } All derivations that have been using "mpi ? null" to provide optional building with MPI have been change in the following way to allow for optional builds with MPI: { ... , mpi , useMpi ? false }
41 lines
1,006 B
Nix
41 lines
1,006 B
Nix
{ lib, stdenv
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, fetchFromGitHub
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, useMpi ? false
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, mpi
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}:
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stdenv.mkDerivation rec {
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pname = "RAxML";
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version = "8.2.12";
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src = fetchFromGitHub {
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owner = "stamatak";
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repo = "standard-${pname}";
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rev = "v${version}";
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sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
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};
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buildInputs = lib.optionals useMpi [ mpi ];
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# TODO darwin, AVX and AVX2 makefile targets
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buildPhase = if useMpi then ''
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make -f Makefile.MPI.gcc
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'' else ''
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make -f Makefile.SSE3.PTHREADS.gcc
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'';
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installPhase = if useMpi then ''
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mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
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'' else ''
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mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
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'';
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meta = with lib; {
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description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
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license = licenses.gpl3;
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homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
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maintainers = [ maintainers.unode ];
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platforms = [ "i686-linux" "x86_64-linux" ];
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};
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}
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