Justin Bedo b1b57ec04e fastp: 0.20.1 -> 0.22.0		2021-08-25 09:52:07 +10:00
..
ants
aragorn
bayescan
bcftools	bcftools: 1.11 -> 1.13	2021-07-10 10:15:10 +00:00
bedops	bedops: 2.4.39 -> 2.4.40	2021-07-23 01:02:40 +00:00
bedtools
bftools
blast
bowtie	bowtie: fix homepage	2021-08-22 16:08:28 +02:00
bowtie2	Merge pull request #111691 from jbedo/bowtie2	2021-08-07 04:03:47 +03:00
bppsuite
bwa
cd-hit	perlPackages.ImageMagick: rename from perlPackages.PerlMagick	2021-08-02 20:05:00 +03:00
clustal-omega
cmtk
conglomerate
dcm2niix	dcm2niix: 1.0.20201102 -> 1.0.20210317	2021-05-02 11:10:40 +00:00
deeptools
delly
diamond
ecopcr
eggnog-mapper
emboss
est-sfs	est-sfs: fix darwin build	2021-05-15 12:10:05 +02:00
exonerate
EZminc
fastp	fastp: 0.20.1 -> 0.22.0	2021-08-25 09:52:07 +10:00
freebayes
hisat2
hmmer
igv
inormalize
itsx
iv
kallisto
kent
kssd
last
lumpy
MACS2
macse	treewide: convert phases that contain ":" to dont* = true (#130500)	2021-07-18 23:42:48 +02:00
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2	minimap2: 2.17 -> 2.22	2021-08-14 15:55:35 +00:00
mni_autoreg
mosdepth	mosdepth: 0.3.1 -> 0.3.2	2021-07-27 09:52:22 +10:00
mrbayes	mrbayes: 3.2.7 -> 3.2.7a	2021-07-27 14:30:23 +02:00
mrtrix
muscle
N3
ncbi-tools
neuron	treewide: ensure pre/post phase hooks are strings	2021-08-20 19:08:42 -04:00
niftyreg
niftyseg
obitools
octopus	octopus: 0.7.3 -> 0.7.4	2021-05-11 08:46:00 +10:00
paml
picard-tools	picard-tools: 2.25.7 -> 2.26.0	2021-08-22 10:47:38 +00:00
platypus
plink-ng
poretools
prodigal
quast
raxml
sambamba	sambamba: fix darwin build	2021-05-22 20:56:09 +02:00
samblaster	samblaster: fix darwin build	2021-05-18 13:41:51 +02:00
samtools
seaview
snpeff
somatic-sniper
sortmerna
spades
stacks	stacks: 2.55 -> 2.59	2021-08-22 07:08:39 +00:00
star
strelka
sumatools
svaba
tebreak
trimal
truvari	truvari: 2.0.2 -> 2.1.1 (#126839)	2021-06-15 22:14:20 +02:00
varscan	varscan: deprecate phases	2021-08-03 00:04:16 +02:00
vcftools
whisper
xenomapper