forked from mirrors/nixpkgs
39 lines
1.2 KiB
Nix
39 lines
1.2 KiB
Nix
{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages, openmp }:
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stdenv.mkDerivation rec {
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version = "4.8.1";
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pname = "cd-hit";
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src = fetchFromGitHub {
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owner = "weizhongli";
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repo = "cdhit";
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rev = "V${version}";
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sha256 = "032nva6iiwmw59gjipm1mv0xlcckhxsf45mc2qbnv19lbis0q22i";
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};
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propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.PerlMagick ];
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nativeBuildInputs = [ zlib makeWrapper ];
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buildInputs = lib.optional stdenv.cc.isClang openmp;
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makeFlags = [
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"CC=${stdenv.cc.targetPrefix}c++" # remove once https://github.com/weizhongli/cdhit/pull/114 is merged
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"PREFIX=$(out)/bin"
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];
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preInstall = "mkdir -p $out/bin";
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postFixup = ''
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wrapProgram $out/bin/FET.pl --prefix PERL5LIB : $PERL5LIB
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wrapProgram $out/bin/plot_2d.pl --prefix PERL5LIB : $PERL5LIB
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wrapProgram $out/bin/clstr_list_sort.pl --prefix PERL5LIB : $PERL5LIB
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'';
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meta = with lib; {
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description = "Clustering and comparing protein or nucleotide sequences";
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homepage = "http://weizhongli-lab.org/cd-hit/";
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license = licenses.gpl2;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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}
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