forked from mirrors/nixpkgs
84 lines
1.4 KiB
Nix
84 lines
1.4 KiB
Nix
{ stdenv
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, buildPythonPackage
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, fetchPypi
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, isPy3k
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# python dependencies
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, click
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, configparser ? null
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, dateutil
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, funcsigs
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, future
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, mock
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, networkx
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, nibabel
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, numpy
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, packaging
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, prov
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, psutil
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, pydot
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, pytest
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, scipy
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, simplejson
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, traits
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, xvfbwrapper
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, pytestcov
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, codecov
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# other dependencies
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, which
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, bash
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, glibcLocales
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}:
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assert !isPy3k -> configparser != null;
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buildPythonPackage rec {
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pname = "nipype";
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version = "1.0.3";
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src = fetchPypi {
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inherit pname version;
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sha256 = "17850c2a34f10f93d12c994101ce86b5a0b7e939e5b854e9f9920c9513cc8e76";
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};
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# see https://github.com/nipy/nipype/issues/2240
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patches = [ ./prov-version.patch ];
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postPatch = ''
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substituteInPlace nipype/interfaces/base/tests/test_core.py \
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--replace "/usr/bin/env bash" "${bash}/bin/bash"
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'';
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propagatedBuildInputs = [
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click
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dateutil
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funcsigs
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future
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networkx
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nibabel
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numpy
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packaging
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prov
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psutil
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pydot
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scipy
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simplejson
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traits
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xvfbwrapper
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] ++ stdenv.lib.optional (!isPy3k) [
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configparser
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];
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checkInputs = [ pytest mock pytestcov codecov which glibcLocales ];
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checkPhase = ''
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LC_ALL="en_US.UTF-8" py.test -v --doctest-modules nipype
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'';
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meta = with stdenv.lib; {
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homepage = http://nipy.org/nipype/;
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description = "Neuroimaging in Python: Pipelines and Interfaces";
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license = licenses.bsd3;
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maintainers = with maintainers; [ ashgillman ];
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};
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}
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