forked from mirrors/nixpkgs
44 lines
1.1 KiB
Nix
44 lines
1.1 KiB
Nix
{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, perl, bash }:
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stdenv.mkDerivation rec {
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name = "${pname}-${version}";
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pname = "bcftools";
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major = "1.6";
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version = "${major}.0";
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src = fetchurl {
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url = "https://github.com/samtools/bcftools/releases/download/${major}/bcftools-${major}.tar.bz2";
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sha256 = "10prgmf09a13mk18840938ijqgfc9y92hfc7sa2gcv07ddri0c19";
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};
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nativeBuildInputs = [ bash ];
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buildInputs = [ zlib bzip2 lzma ];
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propagatedBuildInputs = [ htslib ];
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makeFlags = [
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"HSTDIR=${htslib}"
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"prefix=$(out)"
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"CC=cc"
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];
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enableParallelBuilding = true;
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doCheck = true;
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preCheck = ''
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sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' test/test.pl test/csq/{sort-csq,make-csq-test} misc/plot-vcfstats
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sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl
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'';
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meta = with stdenv.lib; {
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description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
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license = licenses.mit;
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homepage = http://www.htslib.org/;
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platforms = platforms.unix;
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maintainers = [ maintainers.mimadrid ];
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};
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}
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