forked from mirrors/nixpkgs
88 lines
2 KiB
Nix
88 lines
2 KiB
Nix
{ lib
|
||
, python
|
||
, buildPythonPackage
|
||
, fetchFromGitHub
|
||
, cython
|
||
, pybind11
|
||
, tiledb
|
||
, numpy
|
||
, wheel
|
||
, isPy3k
|
||
, setuptools_scm
|
||
, psutil
|
||
, pandas
|
||
}:
|
||
|
||
buildPythonPackage rec {
|
||
pname = "tiledb";
|
||
version = "0.6.6";
|
||
format = "setuptools";
|
||
|
||
src = fetchFromGitHub {
|
||
owner = "TileDB-Inc";
|
||
repo = "TileDB-Py";
|
||
rev = version;
|
||
sha256 = "0b2kn1xyf7d994kz29dpqiaf8yzvx0axw4yqi854c54pl22ddgzl";
|
||
};
|
||
|
||
nativeBuildInputs = [
|
||
cython
|
||
pybind11
|
||
setuptools_scm
|
||
];
|
||
|
||
buildInputs = [
|
||
tiledb
|
||
];
|
||
|
||
propagatedBuildInputs = [
|
||
numpy
|
||
wheel # No idea why but it is listed
|
||
];
|
||
|
||
checkInputs = [
|
||
psutil
|
||
# optional
|
||
pandas
|
||
];
|
||
|
||
TILEDB_PATH = tiledb;
|
||
|
||
SETUPTOOLS_SCM_PRETEND_VERSION = version;
|
||
|
||
disabled = !isPy3k; # Not bothering with python2 anymore
|
||
|
||
postPatch = ''
|
||
# Hardcode path to shared object
|
||
substituteInPlace tiledb/__init__.py --replace \
|
||
'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
|
||
|
||
# Disable failing test
|
||
substituteInPlace tiledb/tests/test_examples.py --replace \
|
||
"test_docs" "dont_test_docs"
|
||
# these tests don't always fail
|
||
substituteInPlace tiledb/tests/test_libtiledb.py --replace \
|
||
"test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
|
||
--replace "test_memory_cleanup" "dont_test_memory_cleanup" \
|
||
--replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
|
||
substituteInPlace tiledb/tests/test_metadata.py --replace \
|
||
"test_metadata_consecutive" "dont_test_metadata_consecutive"
|
||
'';
|
||
|
||
checkPhase = ''
|
||
pushd "$TMPDIR"
|
||
${python.interpreter} -m unittest tiledb.tests.all.suite_test
|
||
popd
|
||
'';
|
||
pythonImportsCheck = [ "tiledb" ];
|
||
|
||
meta = with lib; {
|
||
description = "Python interface to the TileDB storage manager";
|
||
homepage = "https://github.com/TileDB-Inc/TileDB-Py";
|
||
license = licenses.mit;
|
||
maintainers = with maintainers; [ fridh ];
|
||
# tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
|
||
broken = true;
|
||
};
|
||
}
|