forked from mirrors/nixpkgs
35 lines
858 B
Nix
35 lines
858 B
Nix
{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }:
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stdenv.mkDerivation rec {
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pname = "samtools";
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version = "1.9";
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src = fetchurl {
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url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8";
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};
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nativeBuildInputs = [ perl ];
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buildInputs = [ zlib ncurses htslib ];
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configureFlags = [ "--with-htslib=${htslib}" ]
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++ stdenv.lib.optional (ncurses == null) "--without-curses";
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preCheck = ''
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patchShebangs test/
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with stdenv.lib; {
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description = "Tools for manipulating SAM/BAM/CRAM format";
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license = licenses.mit;
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homepage = http://www.htslib.org/;
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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