{ stdenv, fetchFromGitHub, cmake, makeWrapper, perl, MNI-Perllib, GetoptTabular, libminc, EBTKS }: stdenv.mkDerivation rec { pname = "N3"; name = "${pname}-1.0.20"; src = fetchFromGitHub { owner = "BIC-MNI"; repo = pname; rev = "2fdd939f0f2b24a4039bc6a8ade4a190a1d8e75d"; sha256 = "13z21c4r09hna3q1csvcn4i7ws5ixbdaja6ch421xv6nydjh2w5g"; }; nativeBuildInputs = [ cmake makeWrapper ]; buildInputs = [ libminc EBTKS ]; propagatedBuildInputs = [ perl MNI-Perllib GetoptTabular ]; cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DEBTKS_DIR=${EBTKS}/lib/" ]; checkPhase = "ctest --output-on-failure"; # don't run the tests as they fail at least due to missing program wrappers in this phase ... postFixup = '' for p in $out/bin/*; do wrapProgram $p --prefix PERL5LIB : $PERL5LIB done ''; meta = with stdenv.lib; { homepage = "https://github.com/BIC-MNI/${pname}"; description = "MRI non-uniformity correction for MINC files"; maintainers = with maintainers; [ bcdarwin ]; platforms = platforms.unix; }; }