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Author SHA1 Message Date
Timo Kaufmann 8cd7b5aab3
gap: 4r8p10 -> 4.10.0 (#53037) 
This new version also has a libgap replacement, so after the next sage
update gap-libgap-compatible and libgap won't be necessary anymore.
 2018-12-29 16:05:56 +01:00
Timo Kaufmann 22c16ed300 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-12-29 12:16:02 +01:00
Timo Kaufmann 95909d4fb6 Revert "sage: preload openblasCompat" 
This reverts commit 4900bbee17.

The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
 2018-12-28 23:06:05 +01:00
Timo Kaufmann 360eddd3a3 sage: remove outdated patch files 2018-12-28 23:06:05 +01:00
Timo Kaufmann 6f0f06ec89 sage: 8.5.rc1 -> 8.5 2018-12-28 23:06:05 +01:00
Alex Branham a5fc513079 R: 3.5.1 -> 3.5.2 
Closes https://github.com/NixOS/nixpkgs/pull/52571.
 2018-12-21 13:59:36 +01:00
Gabriel Ebner 21597583f9
Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 2.8.1 -> 2.8.2
 2018-12-17 09:46:32 +01:00
Timo Kaufmann b09967d812 sage: 8.5.rc0 -> 8.5.rc1 2018-12-16 21:33:28 +01:00
Jörg Thalheim 33c227c23b
Merge pull request #52392 from r-ryantm/auto-update/calc 
calc: 2.12.7.1 -> 2.12.7.2
 2018-12-16 17:33:43 +00:00
R. RyanTM 67536060ac calc: 2.12.7.1 -> 2.12.7.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-12-16 07:44:09 -08:00
Michael Raskin 2f0cbb34cf
Merge pull request #52171 from r-ryantm/auto-update/pari 
pari: 2.11.0 -> 2.11.1
 2018-12-15 12:08:50 +00:00
R. RyanTM 943e6fa283 pari: 2.11.0 -> 2.11.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pari/versions
 2018-12-14 22:17:15 -08:00
R. RyanTM a7e1717d4b qalculate-gtk: 2.8.1 -> 2.8.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qalculate-gtk/versions
 2018-12-14 07:37:22 -08:00
luz.paz ab9532b1fe gmsh: 4.0.5 -> 4.0.7 2018-12-14 08:01:20 -05:00
Timo Kaufmann 90bc5ce04d sage: 8.5.beta5 -> 8.5.beta6 2018-12-10 19:36:24 +01:00
Timo Kaufmann f0ea741a9a
Merge pull request #51786 from symphorien/giac-1.5 
giac: 1.4.9 -> 1.5.0
 2018-12-10 13:40:03 +01:00
Symphorien Gibol 29242e472e giac: build with nauty support 2018-12-09 23:18:58 +01:00
Symphorien Gibol 2253b3e760 nauty: also install libs 2018-12-09 23:18:53 +01:00
Symphorien Gibol 8b4f885264 giac: add missing optional dependencies 2018-12-09 23:18:53 +01:00
Symphorien Gibol e7801461e0 giac: don't split in multiple outputs for when gui enabled 
This breaks the Phys and Turtle menu, among other things.
 2018-12-09 23:18:53 +01:00
Symphorien Gibol b5435d0551 giac: 1.4.9 -> 1.5.0 2018-12-09 23:18:46 +01:00
Frederik Rietdijk a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Timo Kaufmann 5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414) 
This reverts commit d9b650f4cc.

The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442.
 2018-12-03 00:44:33 +01:00
markuskowa 506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https 
Favor HTTPS URLs - the GNU edition
 2018-12-02 16:52:33 +01:00
c0bw3b 0498ccd076 Treewide: use HTTPS on GNU domains 
HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
 2018-12-02 15:51:59 +01:00
c0bw3b 0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Jan Tojnar a51a99c690
gobject-introspection: rename package 
camelCase package name was a huge inconsistency in GNOME package set.
 2018-12-02 12:42:29 +01:00
Brenton Horne 10f40f3ac6 scilab-bin: adding application launchers 
Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
 2018-12-02 17:53:40 +10:00
Brenton Horne 7041972128 scilab-bin: adding bin/scilab symlink (#51346) 
Should fix #51343, merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
 2018-12-01 23:25:40 +01:00
Timo Kaufmann 88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix 
sage: misc fixes
 2018-12-01 22:04:48 +01:00
Timo Kaufmann 0e570199de sage: fix jmol integration 2018-12-01 21:31:29 +01:00
Timo Kaufmann cb73495f02 sagenb: fix matplotlib path 2018-12-01 20:41:40 +01:00
Timo Kaufmann d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446) 2018-12-01 12:57:55 +01:00
Matthew Bauer 76c7a8bac0
Merge pull request #51205 from matthewbauer/more-setup-hooks 
Add premake & imake setup hook
 2018-11-29 19:36:25 -06:00
Matthew Bauer c0a804c747 treewide: add dontUseImakeConfigure where needed 
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:

- Xaw3d
- R
- tkgate
- ssvnc
 2018-11-28 20:14:45 -06:00
Timo Kaufmann d6376bca6d sage: don't test the downgraded R 
Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249. The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
 2018-11-28 22:52:15 +01:00
Timo Kaufmann 359bf7f1e3 sage: disable test timeout 
Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
 2018-11-28 22:37:24 +01:00
Timo Kaufmann 4900bbee17 sage: preload openblasCompat 2018-11-28 20:44:09 +01:00
Timo Kaufmann 7ca2915a50 sage: 8.5.beta4 -> 8.5.beta5 2018-11-27 18:26:16 +01:00
Timo Kaufmann 2dd9a0ed72 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-11-27 18:25:39 +01:00
Timo Kaufmann 90cebaf828 sage: 8.5.beta3 -> 8.5.beta4 2018-11-25 19:39:18 +01:00
Timo Kaufmann 2a87caa892 sage: 8.5.beta2 -> 8.5.beta3 2018-11-25 19:39:17 +01:00
Timo Kaufmann 3370247f7f sage: 8.5.beta1 -> 8.5.beta2 2018-11-25 19:39:17 +01:00
Timo Kaufmann 883aa99226 sage: add short tests 2018-11-25 19:39:13 +01:00
Timo Kaufmann 8e7da1b8a4 sage: 8.5.beta0 -> 8.5.beta1 2018-11-25 19:36:21 +01:00
Timo Kaufmann 6138f5d5eb sage: 8.4 -> 8.5.beta0 2018-11-25 19:36:21 +01:00
Timo Kaufmann 2fbde72556
sage: add tkinter as matplotlib backend (#51032) 
Fixes #50959.
 2018-11-25 17:38:45 +01:00
Timo Kaufmann 98c94d3d7d sage: add jupyter notebook support 
Fixes #48544.
 2018-11-25 15:54:31 +01:00
Timo Kaufmann 0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor 
Sage refactor
 2018-11-24 23:59:28 +01:00
Timo Kaufmann a0723f1285 sage: don't fix node version 2018-11-24 23:14:38 +01:00
Timo Kaufmann e28a8ed287 sage: add some flexibility to the test runner 
Make it possible to run individual tests. This is very useful while
git-bisecting.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 21f9123ea6 sage: remove openblas hack 
The pc files have since been included into the openblas package.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 3832ddedb9 sage: refactor 2018-11-24 23:14:33 +01:00
c0bw3b 0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Timo Kaufmann 9b4a518465 sage: drop known-padics-failure patch 
The failure was not observed for a while and is probably fixed now.
 2018-11-24 19:01:57 +01:00
Timo Kaufmann ca6475b5e8 sage: drop unused patches 2018-11-24 19:01:57 +01:00
Michael Raskin 6fe39605df polymake: init at 3.2r4 2018-11-22 12:29:14 +03:00
Frederik Rietdijk fd26e7be2a Merge master into staging-next 2018-11-20 11:47:26 +01:00
luzpaz 0ec2af3736
gmsh: 4.0.4 -> 4.0.5 
Manually updated
 2018-11-19 11:12:38 -05:00
Frederik Rietdijk 63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Jörg Thalheim 131f2e93b6
sage: unpin nodePackage version 2018-11-16 21:24:25 +00:00
Renaud 650036f022
Merge pull request #50359 from jfrankenau/gurobi-java 
gurobi: install Java library files
 2018-11-15 14:13:47 +01:00
Johannes Frankenau b4e13e6257 gurobi: install Java library files 2018-11-14 19:38:18 +01:00
Renaud 7ca9d67948
Merge pull request #50102 from r-ryantm/auto-update/gp2c 
gp2c: 0.0.11 -> 0.0.11pl1
 2018-11-14 16:07:49 +01:00
markuskowa f597a88542
Merge pull request #50101 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.2 -> 4.0.4
 2018-11-14 12:46:48 +01:00
Markus Kowalewski 644ab709e7
gmsh: restrict platform to x86_64-linux 2018-11-14 12:33:37 +01:00
Markus Kowalewski ced40eabfd
gmsh: use openblas instead of atlas/lapack 
* openblas is properly recognized by cmake
* the cmake patch is no longer neccessary
 2018-11-14 11:41:46 +01:00
Matthew Bauer 2e18ba6c5a
Merge pull request #49776 from matthewbauer/atlas-remove 
atlas: remove
 2018-11-13 19:18:35 -06:00
Frederik Rietdijk daf3297cb4 Merge master into staging-next 2018-11-12 18:59:08 +01:00
Peter Simons 22a802584f
Merge pull request #50179 from Thra11/r-without-jdk 
R: Remove jdk dependency on aarch32/64
 2018-11-12 12:42:39 +01:00
Frederik Rietdijk 7863aae5b2 Merge master into staging-next 2018-11-11 08:59:44 +01:00
markuskowa 45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski 6533d7588d
colpack: set platform to linux 2018-11-11 02:17:49 +01:00
Tom Hall b51018ed2e R: Remove jdk dependency on aarch32/64 
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
 2018-11-10 20:53:26 +00:00
R. RyanTM 2fd0c31673 calc: 2.12.6.8 -> 2.12.7.1 (#50173) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-11-10 15:32:06 +01:00
Gabriel Ebner 698ad2dd4d nasc: 0.5.0 -> 0.5.1 2018-11-10 14:18:31 +01:00
Gabriel Ebner 5f2a7607fa qalculate-gtk: 2.6.2 -> 2.8.1 2018-11-10 13:17:17 +01:00
Frederik Rietdijk 53d00c3351 Merge master into staging-next 2018-11-10 11:08:54 +01:00
R. RyanTM f5b4eb63f3 gp2c: 0.0.11 -> 0.0.11pl1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
 2018-11-09 17:56:17 -08:00
R. RyanTM 6f2bb3c275 gmsh: 4.0.2 -> 4.0.4 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-11-09 17:41:49 -08:00
Timo Kaufmann efe6322ce4 pythonPackages.networkx: 2.1 -> 2.2 2018-11-07 20:15:37 +01:00
Timo Kaufmann 72e6e792f6 sage: add fetchSageDiff utility function 2018-11-07 20:15:37 +01:00
Matthew Bauer 95373d3634 atlas: remove 
atlas is broken and can apparently be removed.

Fixes #49594
 2018-11-04 20:23:12 -06:00
Matthew Bauer 7f4b26681d
Merge pull request #49417 from matthewbauer/disallow-native-build-inputs 
Disallow references to nativeBuildInputs
 2018-11-02 20:26:48 -05:00
Jan Tojnar 3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update 
update some elementary thirdparty apps
 2018-11-02 21:29:57 +01:00
worldofpeace 0a2420bccd nasc: 0.4.7 -> 0.5.0 2018-11-02 16:01:05 -04:00
Tuomas Tynkkynen 067d1cf330 Merge remote-tracking branch 'upstream/master' into staging 
Conflicts:
	pkgs/applications/science/math/sage/sage-src.nix
 2018-10-27 19:58:03 +03:00
Timo Kaufmann 2513747356 sage: fix attrname 
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
 2018-10-27 14:18:08 +02:00
Timo Kaufmann fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Timo Kaufmann 2ce2fcfc30 pythonPackages.cython: 0.28.5 -> 0.29 
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
 2018-10-24 20:05:44 +02:00
Timo Kaufmann db75fe7313 sage: fix doctest 
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
 2018-10-22 14:52:19 +02:00
Timo Kaufmann b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann 38c2be5ffe sage: fix docbuild 
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
 2018-10-21 14:16:06 +02:00
Timo Kaufmann a413dedde1
Merge pull request #44527 from timokau/sage-8.4 
[WIP] sage: 8.3 -> 8.4
 2018-10-20 01:34:34 +02:00
Timo Kaufmann 7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
R. RyanTM eeb2ee296c gmsh: 4.0.1 -> 4.0.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-10-15 21:54:45 -07:00
Timo Kaufmann f89df0b556 sage: 8.4.rc0 -> 8.4.rc1 2018-10-13 13:27:10 +02:00
Timo Kaufmann 27919e06f1 sage: 8.4.beta7 -> 8.4.rc0 2018-10-07 12:23:10 +02:00
Jörg Thalheim 5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc 
calc: 2.12.6.6 -> 2.12.6.8
 2018-10-04 23:31:38 +01:00
R. RyanTM 904fd99bb4 calc: 2.12.6.6 -> 2.12.6.8 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-10-03 16:01:08 -07:00
R. RyanTM 98092f7a67 nauty: 26r10 -> 26r11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
 2018-10-03 05:54:07 -07:00
Timo Kaufmann a13eb29485 sage: 8.4.beta6 -> 8.4.beta7 2018-10-01 17:38:20 +02:00
Timo Kaufmann bcc066b569 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-10-01 14:20:33 +02:00
R. RyanTM b65fbe8fcd gmsh: 4.0.0 -> 4.0.1 (#47060) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-09-28 22:17:32 +02:00
Timo Kaufmann 0be6ca9e71 sage: 8.4.beta5 -> 8.4.beta6 2018-09-27 12:08:15 +02:00
Timo Kaufmann 1217882907 sage: 8.4.beta4 -> 8.4.beta5 2018-09-15 17:23:14 +02:00
Timo Kaufmann c3f652d5a8 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-15 17:22:11 +02:00
Silvan Mosberger 10a412f251
almonds: update license 2018-09-09 02:04:34 +02:00
Markus Kowalewski 1cff2dd135
pynac: add license 2018-09-08 14:48:19 +02:00
Timo Kaufmann db784d883c sage: re-add pkg-config aliases 
Those were removed because they were added to openblas itself. There was
an error with that however and it will take some time until the fix
makes its way through staging. For the time being, reverting this part
of 26d5d030fe will fix the sage build.
This commit should be reverted once
408eacbc89 is in master.
 2018-09-07 21:55:41 +02:00
Timo Kaufmann 770c5b8a69 sage: 8.4.beta3 -> 8.4.beta4 2018-09-07 20:56:37 +02:00
Timo Kaufmann 4ab832d6e7 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-07 20:54:09 +02:00
Timo Kaufmann 7521f2863d sage: fix numpy and scipy integration 2018-09-07 18:36:52 +02:00
Profpatsch 3e45b61a99 lib/trivial: add a few examples of usage of assertMsg/assertOneOf 2018-09-06 18:14:27 +02:00
Daniël de Kok 590ce7d1ae mxnet: fix library dependencies. 
- mxnet now builds the open source MKL DNN library. However, this
  was not included with the build.
- mxnet builds its own OpenMP library, even when OpenMP is provided
  by the system. This leads to problems, so remove the included
  OpenMP implementation:

  https://github.com/apache/incubator-mxnet/pull/12160
 2018-09-04 20:27:25 +02:00
Daniël de Kok 93a5947158 mxnet: 1.1.0 -> 1.2.1 (#46026) 
Update and fix the build:

- Perl is a build-time requirement.
- Fix hardcoded /bin/bash invocation.
 2018-09-04 11:37:54 +02:00
Timo Kaufmann 46e653673e sage: 8.4.beta2 -> 8.4.beta3 2018-09-02 12:42:44 +02:00
xeji a3434cf4e5
Merge pull request #45921 from markuskowa/homepages 
Cleanup homepage links
 2018-09-02 08:39:30 +02:00
Markus Kowalewski 5cf25dded7
symmetrica: update homepage 2018-09-02 01:46:25 +02:00
Markus Kowalewski c184150a22
jags: update homepage + fix license 2018-09-02 01:46:18 +02:00
Robert Schütz 93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson 2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system 
It is deprecated and will be removed after 18.09.
 2018-08-30 17:20:32 -04:00
Frederik Rietdijk 6038628ea5 Merge master into staging-next 2018-08-29 20:54:55 +02:00
R. RyanTM e301589013 gmsh: 3.0.6 -> 4.0.0 (#45592) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions.
 2018-08-27 16:06:28 +02:00
Frederik Rietdijk 7945295410 Merge master into staging 2018-08-27 08:21:50 +02:00
Timo Kaufmann c614c15f93
Merge pull request #45257 from timokau/openblas-pc 
openblas: add pkg-config aliases
 2018-08-26 20:13:19 +02:00
Timo Kaufmann 0e4160a3a1 pythonPackages.sympy: 1.1.1 -> 1.2 2018-08-26 19:56:44 +02:00
Timo Kaufmann 1b42a1ba1e sage: 8.4.beta1 -> 8.4.beta2 2018-08-26 13:09:22 +02:00
Timo Kaufmann 26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Markus Kowalewski a1129ef9cb
glsurf: add license 2018-08-20 21:15:16 +02:00
Markus Kowalewski 3c1819fcce
ginac: add license 2018-08-20 21:02:45 +02:00
Vladimír Čunát cbabebcc2e
Merge branch 'master' into staging-next 
Hydra: ?compare=1473892
 2018-08-17 13:45:21 +02:00
zimbatm b7e50d52f0
caffe: add darwin support (#44616) 2018-08-16 12:46:51 +01:00
Gabriel Ebner f207998d79 qalculate-gtk: 2.6.1 -> 2.6.2 2018-08-16 11:56:27 +02:00
Bernard Fortz 22c15abe20 cplex: init at 12.8 (#44029) 
* cplex: init at 12.8

* Removed bundled java from bin directory

* Refactored

* More refactoring

* Added config option for releasePath

* Minor cleanup
 2018-08-15 19:46:09 -05:00
Timo Kaufmann 52b9217b50 sage: 8.4.beta0 -> 8.4.beta1 2018-08-16 00:17:14 +02:00
Timo Kaufmann df97127114 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-08-15 13:51:07 +02:00
adisbladis 2937e7367f
Merge pull request #45009 from jbaum98/ratpoints-darwin 
ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
 2018-08-15 15:28:39 +08:00
Jörg Thalheim 0ee6d7e3ab
Merge pull request #45011 from jbaum98/symmetrica-darwin 
symmetrica: Add darwin support
 2018-08-15 07:54:56 +02:00
Jake Waksbaum 47aa6abe96 ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support 2018-08-14 11:27:59 -04:00
Jake Waksbaum 8ae47fa81a symmetrica: Add darwin support 2018-08-14 11:23:21 -04:00
Jake Waksbaum be81e1e29c gfan: Add darwin support 2018-08-14 00:16:46 -04:00
Vladimír Čunát 00df25ee57
Merge branch 'master' into staging-next 
Hydra: ?compare=1472947
 2018-08-12 10:33:41 +02:00
Jake Waksbaum 3babbaaa47 palp: Add darwin support (#44829) 2018-08-09 22:28:27 +02:00
Frederik Rietdijk d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann 291018b34e arb: 2.13.0 -> 2.14.0 (#44600) 2018-08-07 16:38:34 +02:00
symphorien 0ca40a51c7 gwyddion, ripser: fix derivation name (#44577) 2018-08-07 01:21:53 +02:00
Timo Kaufmann a8b048c686 sage: 8.3 -> 8.4.beta0 2018-08-05 21:09:56 +02:00
Michael Raskin 75cb04672f
Merge pull request #44508 from timokau/cddlib-0.94j 
cddlib: 0.94i -> 0.94j
 2018-08-05 19:03:47 +00:00
Timo Kaufmann 0a44ff7676 cddlib: 0.94i -> 0.94j 
cddlib was autotoolized, incorporated equivalents to the sage patches
and moved to GitHub.
 2018-08-05 19:02:45 +02:00
Michael Raskin 6b0234942b
Merge pull request #44501 from timokau/sage-native-pari 
sage: don't override pari
 2018-08-05 15:14:00 +00:00
Timo Kaufmann 30c822189d sage: don't override pari 
Sage assumes that pari does not use threads. However instead of
disabling them at compile time, we can diable them at runtime instead.
As a result, sage doesn't need its own version of pari anymore. That
means less rebuilds, less complexity and easier debugging.
 2018-08-05 13:48:14 +02:00
Michael Raskin 58384b1dd0 scilab-bin: 5.5.2 -> 6.0.1 2018-08-05 11:27:35 +03:00
Michael Raskin b79dbfe482
Merge pull request #43281 from timokau/sage-8.3 
sage: 8.2 -> 8.3
 2018-08-04 13:02:06 +00:00
Timo Kaufmann 834a24e0ff sage: don't pin ntl 
Now possible because of the lcalc c++11 patch.
 2018-08-04 14:22:58 +02:00
Timo Kaufmann e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
Timo Kaufmann fa34f6d41c sage: don't pin pari 2018-08-04 14:22:28 +02:00
Timo Kaufmann e82c26af9b sage: don't pin singular 2018-08-04 14:22:28 +02:00
Timo Kaufmann 289173366b singular: backport ntl error handling patch 2018-08-04 14:22:27 +02:00
Timo Kaufmann 840b64fdb8 sage: 8.2 -> 8.3 2018-08-04 14:22:21 +02:00
Tuomas Tynkkynen 008fd5fcf5 Merge remote-tracking branch 'upstream/master' into staging 2018-08-04 15:17:42 +03:00
John Ericson db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
John Ericson 632d24f11f scilab: Make configureFlags a list 2018-08-03 17:05:58 -04:00
Robert Schütz ae3bbf2958 almonds: use python3 2018-08-03 18:04:46 +02:00
Johannes Frankenau 79cd841713 bcal: 1.8 -> 1.9 2018-08-03 09:08:26 +02:00
R. RyanTM 38c8be3726 gp2c: 0.0.10pl1 -> 0.0.11 (#43941) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions.
 2018-07-31 00:30:21 +02:00
Timo Kaufmann ae821e09e7 glpk: adopt error recovery patch (#44201) 
This makes it possible to use "vanilla" glpk for sage and shouldn't
affect anything else.
 2018-07-29 20:53:56 +02:00
Frederik Rietdijk 1fe2a0f81e
Merge pull request #44129 from timokau/pari-2.11.0 
pari: 2.9.5 -> 2.11.0
 2018-07-27 11:57:57 +02:00
Timo Kaufmann 330c501be0 pari: 2.9.5 -> 2.11.0 
The pari update makes it necessary to disable a giac test that only
fails because it directly tests the pari interface.
 2018-07-26 18:42:17 +02:00
Timo Kaufmann 024c23503c singular: 4.1.1p1 -> 4.1.1p2 2018-07-23 12:17:25 +02:00
Jörg Thalheim 218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk 1a6af9f88e
Merge pull request #43857 from volth/unused 
[bot] treewide: remove unreferenced code
 2018-07-20 21:06:32 +02:00
volth 87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Matthew Bauer fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix 
fetchpatch: quote excludes
 2018-07-19 00:35:09 -04:00
Michael Raskin 877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1 
ntl: 9.11.0 -> 11.2.1
 2018-07-18 15:08:43 +00:00
Jan Tojnar a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann cad446513e ntl: 9.11.0 -> 11.2.1 
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
 2018-07-18 14:58:38 +02:00
Timo Kaufmann 3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
fragamus 794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann c77d1e5b31 eclib: 20171219 -> 20180710 
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
 2018-07-15 14:59:28 +02:00
Johannes Frankenau d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Timo Kaufmann 85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Timo Kaufmann 35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
R. RyanTM ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
 2018-07-11 00:45:08 -07:00
R. RyanTM 99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
 2018-07-09 16:02:58 +02:00
Gabriel Ebner 887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Silvan Mosberger fac943fc81
Merge pull request #42897 from fragamus/master 
add bliss package
 2018-07-04 13:59:41 +02:00
Michael Gough e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sarah Brofeldt f06ce58323
Merge pull request #42843 from fragamus/master 
hmetis: init at 1.5
 2018-07-02 11:40:41 +02:00
Peter Simons cbc1a03ab8 R: update to version 3.5.1 
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
 2018-07-02 11:33:50 +02:00
Michael Gough f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Timo Kaufmann 70ba695777 sage: replace JUPYTER_PATH patch by upstream patch 
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
 2018-06-30 22:30:30 +02:00
Timo Kaufmann 398dad270a sage, arb: update sage dependencies arb and pynac 
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
 2018-06-30 17:05:56 +02:00
Timo Kaufmann 17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann 424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00