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Author SHA1 Message Date
Jörg Thalheim b2a1e04eed
Merge remote-tracking branch 'upstream/staging-next' into HEAD 2021-04-17 16:37:04 +02:00
github-actions[bot] f620e30ca4
Merge master into staging-next 2021-04-17 00:15:03 +00:00
Vincent Laporte ab16ad8764 coq_8_13: 8.13.1 → 8.13.2 2021-04-16 22:32:31 +02:00
Alyssa Ross e459db3f81 glsurf: fix license 
The README says GPL 2 or any later version, not LGPL.
 2021-04-16 14:06:10 +00:00
Alyssa Ross 70e33e3ae3 glsurf: use current giflib 
This requires bumping the version of camlimages used by glsurf to a
version that supports current giflib.  The most recent versions of
camlimages (even of 4.x) don't support ocaml 4.01 any more, so I've
upgraded to 4.1.2 here, the last version that supports ocaml 4.01 (and
which happily supports current giflib).
 2021-04-16 14:06:10 +00:00
Alyssa Ross 6e3b5fd046 libungif: remove in favour of giflib 
libungif was merged into giflib in 2006, and hasn't been updated
since.  All non-broken packages still using it build fine with giflib.

See <http://giflib.sourceforge.net/history.html>.
 2021-04-16 14:06:10 +00:00
Martin Weinelt 7cf67850c0
Merge branch 'master' into staging-next 2021-04-15 01:01:26 +02:00
Sandro 28fb287d4b
Merge pull request #118610 from GregorySchwartz/init/macs2 2021-04-14 21:15:38 +02:00
Gregory W. Schwartz b7763a8287 macs2: init at 2.2.7.1 
Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Renamed package, updated version, set pypi, and added import test.

Update pkgs/applications/science/biology/MACS2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Add comment about error for checking.

Two spaces indent.
 2021-04-14 10:17:53 -04:00
Vladimír Čunát d2eb7a7887
Merge branch 'staging' into staging-next 
A few conflicts but relatively clear ones (I think).
 2021-04-14 10:08:25 +02:00
Dmitry Kalinkin a469a7be55
sherpa: compile with --enable-pythia flag 2021-04-13 09:34:42 -04:00
Luke Granger-Brown 08b22e605b Merge remote-tracking branch 'upstream/staging-next' into down-integrate-staging 2021-04-12 18:49:01 +00:00
hjones2199 79c3609603
celestia: 1.6.1 -> 1.6.2.2 (#117999) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-04-12 20:17:17 +02:00
Fabian Affolter e4149e6e0b
rink: specify license 2021-04-11 23:18:32 +02:00
R. RyanTM 12518ff683 rink: 0.5.1 -> 0.6.0 2021-04-11 14:49:45 +00:00
Jan Tojnar 625ce6c7f6 Merge branch 'staging-next' into staging 
In python-packages.nix, resolve conflict between 50d604314e and 187d0371ab.
 2021-04-08 17:14:31 +02:00
Sandro 32b567d9e6
Merge pull request #118775 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.1 -> 4.1.2
 2021-04-08 09:57:15 +02:00
Ben Wolsieffer 1e52d002bb qgroundcontrol: 4.1.1 -> 4.1.2 2021-04-08 00:04:07 -04:00
github-actions[bot] 1bd1969867
Merge staging-next into staging 2021-04-06 18:15:33 +00:00
Jan Tojnar 70babe5bcf Merge branch 'staging-next' into staging 2021-04-06 16:25:41 +02:00
voidless b6c315b4fb geogebra6: 6_0_620_0 -> 6_0_631_0 2021-04-06 10:52:30 +02:00
Dmitry Kalinkin 1d93243467
root: 6.22.06 -> 6.22.08 2021-04-06 02:41:06 -04:00
Gregory Schwartz 9bf867612d
meme-suite: init at 5.1.1 (#118603) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-04-05 22:43:27 +02:00
Sandro Jäckel 3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Frederik Rietdijk 1e7ed8b2f3
Merge branch 'staging' into python-unstable 2021-04-04 12:59:12 +02:00
Sandro Jäckel 33a395f195
yacc: deprecate alias 
and add a new line after the alphabetically sorting to please my inner monk
 2021-04-04 03:18:58 +02:00
Frederik Rietdijk c12ef05bda sage: keep cypari2 at 2.1.1 2021-04-03 17:49:44 +02:00
Frederik Rietdijk d20a05e963 libpoly: use python3 2021-04-03 17:06:22 +02:00
Frederik Rietdijk 7865ac1046 lean2: stay with python2 
broken, so who knows...
 2021-04-03 17:06:21 +02:00
Frederik Rietdijk 7368564f99 gurobi: stay with python2 2021-04-03 17:06:08 +02:00
Frederik Rietdijk ee258981bf ginac: use python3 2021-04-03 17:06:07 +02:00
Jack Gerrits dfab218b9b vowpal-wabbit: 8.9.2 -> 8.10.0 2021-04-01 13:46:09 -04:00
Sandro 498cb76bdf
Merge pull request #117799 from LeSuisse/aliza-1.98.57 
aliza: 1.98.43 -> 1.98.57
 2021-03-30 17:18:15 +02:00
Sandro 9e24497453
Merge pull request #117970 from mpoquet/simgrid-3.26-to-3.27 
simgrid: 3.26 -> 3.27
 2021-03-30 14:28:37 +02:00
Ryan Mulligan f3262c2a3e
Merge pull request #117648 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.0 -> 2.25.1
 2021-03-29 16:10:25 -07:00
Millian Poquet 99a5de6ebc simgrid: 3.26 -> 3.27 2021-03-29 21:20:27 +02:00
Justin Bedo 76bd953162 bedops: init 2.4.39 2021-03-28 22:27:51 -04:00
Maximilian Bosch b8779b59d5
Merge pull request #117760 from r-ryantm/auto-update/calc 
calc: 2.12.9.0 -> 2.12.9.1
 2021-03-28 23:35:49 +02:00
Maximilian Bosch 4fc2ef2c5e
stellarium: 0.20.4 -> 0.21.0 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.0
 2021-03-28 22:46:57 +02:00
Ryan Mulligan 9a35bc87e8
Merge pull request #117607 from r-ryantm/auto-update/marvin 
marvin: 21.2.0 -> 21.3.0
 2021-03-27 20:35:56 -07:00
Thomas Gerbet f801e2e92c aliza: 1.98.43 -> 1.98.57 2021-03-27 23:49:33 +01:00
R. RyanTM 190a6f04b6 calc: 2.12.9.0 -> 2.12.9.1 2021-03-27 07:21:16 +00:00
Sandro 53734a4355
Merge pull request #117730 from veprbl/pr/snakemake_6_0_5 
snakemake: 5.28.0 -> 6.0.5
 2021-03-27 02:44:44 +01:00
Dmitry Kalinkin 8887f4655e
snakemake: 5.28.0 -> 6.0.5 2021-03-26 18:32:26 -04:00
Gabriel Ebner 109d6b3bdb
Merge pull request #117712 from gebner/elan0110 
elan: 0.10.3 -> 0.11.0
 2021-03-26 19:58:29 +01:00
Gabriel Ebner 0661cf4882 elan: 0.10.3 -> 0.11.0 
Also adapt the patchelf patch from rustup, since Lean 4 now dynamically
links to gmp.
 2021-03-26 19:16:33 +01:00
R. RyanTM 49e4c1e323 picard-tools: 2.25.0 -> 2.25.1 2021-03-26 03:16:44 +00:00
Mario Rodas 01f3ceeaa9
Merge pull request #116630 from r-ryantm/auto-update/lean 
lean: 3.27.0 -> 3.28.0
 2021-03-25 19:15:00 -05:00
Florian Klink 7d19272ef2
Merge pull request #115820 from flokli/xmedcon 
xmedcon: init at 0.21.0
 2021-03-25 23:01:58 +01:00
Dmitry Kalinkin bf5c995ad2
Merge pull request #116487 from veprbl/pr/professor_init 
professor: init at 2.3.3
 2021-03-25 16:07:55 -04:00