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Author SHA1 Message Date
Frederik Rietdijk 74c24385cb Merge master into staging-next 2019-07-09 15:46:00 +02:00
Frederik Rietdijk 7cf5909fad Merge staging-next into staging 2019-07-09 15:44:08 +02:00
Millian Poquet 0513ae77ff simgrid: 3.22.2 -> 3.23 2019-07-08 14:00:14 +02:00
Vladimír Čunát 0746c4dbb4
Merge branch 'master' into staging-next 
There are several thousand rebuilds from master already.
Hydra nixpkgs: ?compare=1528940
 2019-07-06 13:44:40 +02:00
Thomas Tuegel 56d5963382
Merge pull request #54525 from ttuegel/feature/qt-5/wrap-qt-apps 
Wrap Qt applications
 2019-07-05 14:38:10 -05:00
Thomas Tuegel 51d78034a1
wrapQtAppsHook: Remove ad hoc Qt wrappers 2019-07-05 10:42:08 -05:00
Peter Simons ec662c5654 R: 3.6.0 -> 3.6.1 2019-07-05 09:05:22 +00:00
Justin Bedo d2d449cea5
hisat2: fix missing perl dependency 2019-07-05 10:29:51 +10:00
markuskowa 8f34a8c368
Merge pull request #64291 from angus-g/gmsh-4.4.0 
gmsh: 4.3.0 -> 4.4.0
 2019-07-04 22:17:46 +02:00
Angus Gibson 8c26b71dc8 gmsh: 4.3.0 -> 4.4.0 2019-07-04 19:21:54 +10:00
Dmitry Kalinkin 3ff069d029
Merge pull request #64120 from smaret/gildas-201907a 
gildas: 20190601_b -> 20190701_a
 2019-07-03 17:28:54 -04:00
Daiderd Jordan da7bcec42f
root: remove cf-private 2019-07-03 22:20:22 +02:00
Frederik Rietdijk 25a77b7210 Merge staging-next into staging 2019-07-03 08:59:42 +02:00
R. RyanTM 4bf65cf0fa verilator: 4.014 -> 4.016 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-07-03 08:30:01 +02:00
Sébastien Maret 08ee08435e
gildas: 20190601_b -> 20190701_a 2019-07-02 11:04:40 +02:00
R. RyanTM 526f12b886 gap: 4.10.1 -> 4.10.2 (#64026) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gap/versions
 2019-07-01 20:06:42 +02:00
worldofpeace 3f4a353737 treewide: use dontUnpack 2019-07-01 04:23:51 -04:00
Maximilian Bosch 1b019ba91d
stellarium: 0.19.0 -> 0.19.1 
https://github.com/Stellarium/stellarium/releases/tag/v0.19.1
 2019-06-28 23:24:11 +02:00
Timo Kaufmann 66fa457ba1
Merge pull request #59989 from timokau/sage-8.8 
sage: 8.7 -> 8.8
 2019-06-27 23:30:12 +02:00
Timo Kaufmann 5b2db39c49 sage: 8.8.rc2 -> 8.8 2019-06-27 22:05:30 +02:00
Timo Kaufmann e7d4386e0e sage: 8.8.rc1 -> 8.8.rc2 2019-06-27 22:03:00 +02:00
Timo Kaufmann 218fd843a3 sage: 8.8.rc0 -> 8.8.rc1 2019-06-27 22:03:00 +02:00
Timo Kaufmann 409bee28b6 sage: 8.8.beta7 -> 8.8.rc0 2019-06-27 22:03:00 +02:00
Timo Kaufmann c76e8fa86e sage: 8.8.beta6 -> 8.8.beta7 2019-06-27 22:02:57 +02:00
Timo Kaufmann 9f434d7080 sage: 8.8.beta5 -> 8.8.beta6 2019-06-27 22:01:40 +02:00
Timo Kaufmann 325a5037bf sage: 8.8.beta4 -> 8.8.beta5 2019-06-27 22:01:37 +02:00
Timo Kaufmann 240d4c31d2 sage: 8.8.beta3 -> 8.8.beta4 2019-06-27 21:57:33 +02:00
Timo Kaufmann 608948e3e9 sage: 8.8.beta2 -> 8.8.beta3 2019-06-27 21:57:33 +02:00
Timo Kaufmann 21c1ab6776 sage: 8.7 -> 8.8.beta2 2019-06-27 21:57:27 +02:00
markuskowa a07d045b00
Merge pull request #63488 from jbedo/octopus 
octopus: init 0.6.3-beta
 2019-06-27 12:43:25 +02:00
Dmitry Kalinkin bff22431b5
Merge pull request #62845 from royneary/nim-0.20.0 
nim: 0.19.4 -> 0.20.0
 2019-06-26 13:00:50 -04:00
Nikolay Amiantov 3dd7d72e43 fast-downward: init at 2019-05-13 2019-06-24 15:59:57 +03:00
Nikolay Amiantov a92611508f cplex: add library info 2019-06-24 15:57:22 +03:00
Nikolay Amiantov 10e1475a79 gurobi: add library suffix 2019-06-24 15:57:22 +03:00
R. RyanTM 3e6ef3e9ef eagle: 9.3.2 -> 9.4.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
 2019-06-23 14:57:04 +02:00
royneary d162165350
mosdepth: 0.2.3 -> 0.2.6 2019-06-22 22:41:59 +02:00
Timo Kaufmann ac28607a03
Merge pull request #63560 from timokau/sage-threejs-r105 
sage: fix threejs r105
 2019-06-20 14:55:13 +02:00
markuskowa 3947441cb9
Merge pull request #63262 from r-ryantm/auto-update/gromacs 
gromacs: 2019.2 -> 2019.3
 2019-06-20 14:26:02 +02:00
Timo Kaufmann 9955657209 sage: fix online threejs 2019-06-20 12:50:00 +02:00
Timo Kaufmann 2d78d928cd sage: backport threejs r100 compatibility 
https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429
 2019-06-20 12:50:00 +02:00
Justin Bedo b8b71aaaf9
octopus: init 0.6.3-beta 2019-06-19 23:09:33 +10:00
Linus Heckemann 32a992af8b
Merge pull request #63479 from lheckemann/dcm2niix 
dcm2niix: 1.0.20170130 -> 1.0.20190410
 2019-06-19 12:05:37 +02:00
Vincent Laporte 1f2a3a2df2 gappa: 1.2 -> 1.3.5 2019-06-19 09:24:34 +00:00
Linus Heckemann 2458209c3e dcm2niix: 1.0.20170130 -> 1.0.20190410 2019-06-18 22:12:40 +02:00
Timo Kaufmann 6e74109b13
sage: fix threejs integration (#63375) 
Before this it didn't find the correct files. Unfortunately, the
interactive parts of sage are hard to test automatically.
 2019-06-18 11:50:41 +02:00
R. RyanTM 3775ef0acd jmol: 14.29.42 -> 14.29.46 (#63277) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-06-17 20:56:11 +02:00
Justin Bedo 1be8ba08d3
strelka: 2.9.5 -> 2.9.10 2019-06-17 16:09:25 +10:00
R. RyanTM 0c54098340 gromacs: 2019.2 -> 2019.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
 2019-06-16 18:22:05 -07:00
volth f3282c8d1e treewide: remove unused variables (#63177) 
* treewide: remove unused variables

* making ofborg happy
 2019-06-16 19:59:05 +00:00
Aaron Andersen 4cb64dba39
Merge pull request #58362 from bzizou/cd-hit 
cd-hit: init at 4.8.1
 2019-06-13 20:39:54 -04:00
Bruno Bzeznik 9fbf8625f1 cd-hit: init at 4.8.1 2019-06-13 14:35:13 +02:00
markuskowa ca099915f7
Merge pull request #62976 from markuskowa/upd-octopus 
octopus: 8.4 -> 9.0
 2019-06-12 09:36:42 +02:00
Markus Kowalewski 4df1e91b31
octopus: 8.4 -> 9.0 2019-06-11 13:02:54 +02:00
Will Dietz e397f4716c z3: 4.8.4 -> 4.8.5 
* drop included patch
* pname-ify
 2019-06-10 17:55:26 -07:00
Will Dietz 94774dad00 pulseview: 0.4.0 -> 0.4.1 
https://sigrok.org/gitweb/?p=pulseview.git;a=blob;f=NEWS;h=69c7ac5d418bbae896906b8c6b64c6719b1912db;hb=05a4de8abd5810cf8219077259ffa44adb08043e
 2019-06-10 23:20:24 +02:00
Robert Scott 48c8756157 pythonPackages.neuron: restrict to x86 platforms 2019-06-09 12:18:58 +02:00
Robert Scott e0aec554eb pythonPackages.neuron: fix for darwin 
un-compensate for some of the darwin quirks the neuron
source is expecting
 2019-06-09 12:18:58 +02:00
R. RyanTM 5bbc9be100 gmsh: 4.2.3 -> 4.3.0 (#62420) 
* gmsh: 4.2.3 -> 4.3.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions

* gmsh: move cmake to nativeBuildInputs
 2019-06-07 18:01:57 +02:00
R. RyanTM 8ebf0eefbe star: 2.7.0f -> 2.7.1a (#62577) 
* star: 2.7.0f -> 2.7.1a

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions

* star: cleanup
 2019-06-06 18:10:34 +02:00
Matthew Bauer d598eca41e
Merge pull request #62752 from matthewbauer/darwin-fixes100 
Fixes for x86_64-darwin failures on Hydra
 2019-06-06 09:46:41 -04:00
Matthew Bauer 441485af66 iv: only use patchelf on linux 2019-06-05 23:42:58 -04:00
Matthew Bauer 693a4efa4c
Merge pull request #53013 from wucke13/betaflight-configurator-naive 
betaflight-configurator: init at 10.5.1
 2019-06-05 10:08:29 -04:00
worldofpeace 1d66d62bbc
Merge pull request #62430 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.100 -> 3.3.101
 2019-06-04 23:12:58 -04:00
Renaud e7e1ae542c
Merge pull request #62499 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.19.2 -> 2.20.2
 2019-06-05 00:05:59 +02:00
R. RyanTM df3cdc29be quantum-espresso: 6.4 -> 6.4.1 (#62556) 2019-06-04 19:24:04 +00:00
Sébastien Maret 39a3ad3dce
gildas: 20190501_a -> 20190601_b 2019-06-03 21:07:00 +02:00
Nikolay Amiantov 1deb406ac2 mxnet: 1.2.1 -> 1.4.1 2019-06-02 21:50:06 +03:00
Nikolay Amiantov 1260b05279 cntk: 2.4 -> 2.7 
Restrict platforms to x86_64-linux.
 2019-06-02 19:40:49 +03:00
R. RyanTM 2998ac28b4 picard-tools: 2.19.2 -> 2.20.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-06-02 05:31:59 -07:00
markuskowa 5e45835011
Merge pull request #62448 from r-ryantm/auto-update/jmol 
jmol: 14.29.40 -> 14.29.42
 2019-06-02 11:46:45 +02:00
R. RyanTM e20c69619f jmol: 14.29.40 -> 14.29.42 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-06-01 17:19:25 -07:00
R. RyanTM 62e667f6ab gtkwave: 3.3.100 -> 3.3.101 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
 2019-06-01 13:31:03 -07:00
worldofpeace b33513d237
Merge pull request #62378 from r-ryantm/auto-update/clp 
clp: 1.17.1 -> 1.17.2
 2019-06-01 12:10:36 -04:00
worldofpeace 62c68b8a72
clp: update homepage 2019-06-01 12:08:20 -04:00
R. RyanTM 6f2d2818b0 cryptoverif: 2.00 -> 2.01 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cryptoverif/versions
 2019-06-01 10:51:25 -05:00
Alyssa Ross 062210bdff treewide: update cargoSha256 hashes for cargo-vendor upgrade 
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.

Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.

The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
 2019-06-01 15:17:52 +00:00
R. RyanTM 332c600f7d clp: 1.17.1 -> 1.17.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
 2019-06-01 04:05:51 -07:00
wucke13 fd121cdd88 Added makeWrapper suggestion 2019-05-31 12:51:51 +02:00
wucke13 db3a1d8adb Update pkgs/applications/science/robotics/betaflight-configurator/default.nix 
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
 2019-05-31 12:51:51 +02:00
wucke13 5fcf9f5559 Update pkgs/applications/science/robotics/betaflight-configurator/default.nix 
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
 2019-05-31 12:51:51 +02:00
wucke13 170009b123 betaflight-configurator: init at 10.5.1 2019-05-31 12:51:51 +02:00
Vincent Laporte 57c3da07eb coq_8_9: 8.9.0 -> 8.9.1 2019-05-29 11:24:45 +02:00
Will Dietz 368f870219
libqalculate,qalculate-gtk: 3.1.0 -> 3.2.0 2019-05-28 19:14:03 -05:00
Jörg Thalheim 10ddd34921
verilator: 4.012 -> 4.014 (#62013) 
verilator: 4.012 -> 4.014
 2019-05-25 09:16:58 +01:00
Dmitry Kalinkin 785204f5a1
Merge pull request #61895 from smaret/gildas-update 
gildas: 20190401_a -> 20190501_a
 2019-05-24 17:48:25 -04:00
R. RyanTM 66b4fd678c verilator: 4.012 -> 4.014 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-05-24 09:19:04 -07:00
Renaud 70a494a486
Merge pull request #61798 from bobvanderlinden/aliza-1.48.10 
aliza: 1.36.3 -> 1.48.10
 2019-05-24 17:23:51 +02:00
Ryan Mulligan 34e8f3b119
Merge pull request #61997 from r-ryantm/auto-update/stacks 
stacks: 2.3e -> 2.4
 2019-05-24 06:31:43 -07:00
R. RyanTM f4a20199d2 stacks: 2.3e -> 2.4 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/stacks/versions
 2019-05-24 03:50:06 -07:00
Sébastien Maret cadd88967f
gildas: 20190401_a -> 20190501_a 2019-05-24 08:11:21 +02:00
Gabriel Ebner cca0aeeb68 spyder: convert to python modules 2019-05-21 18:23:07 +02:00
Bob van der Linden c8571f6a2c
aliza: ? -> 1.48.10 2019-05-21 11:31:38 +02:00
Cyril Cohen d16a78b512 several fixes in coq and coqPackages.mathcomp (and extras) 2019-05-21 08:55:38 +02:00
markuskowa 82ea400e46
Merge pull request #61630 from markuskowa/upd-molden 
molden: 5.9.5 -> 6.1
 2019-05-18 20:13:57 +02:00
Robin Gloster 43aa2e30c3
Merge pull request #58369 from bzizou/clustalo 
clustal-omega: init at 1.2.4
 2019-05-18 10:16:43 +00:00
Robin Gloster 6cf583cf2f
Merge pull request #60406 from JohnAZoidberg/remove-isnull 
treewide: Remove usage of isNull
 2019-05-18 09:36:24 +00:00
Markus Kowalewski dce18eefd1
molden: 5.9.5 -> 6.1 2019-05-17 13:07:53 +02:00
Aaron Andersen 8b3350cf15
Merge pull request #61462 from mpoquet/simgrid-3.21-to-3.22.2 
simgrid: 3.21 -> 3.22.2
 2019-05-16 12:04:44 -04:00
Will Dietz 51202e96fa
nasc: 0.5.2 -> 0.5.4 
https://github.com/parnold-x/nasc/releases/tag/0.5.4
https://github.com/parnold-x/nasc/releases/tag/0.5.3
 2019-05-15 16:59:26 -05:00
Millian Poquet 13aa449bab simgrid: remove unneeded 'name' definition 2019-05-15 12:35:12 +02:00