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Author SHA1 Message Date
github-actions[bot] f66386e3b1
Merge master into staging-next 2021-10-31 12:01:13 +00:00
Robert Scott b56f93abf9
Merge pull request #143764 from r-ryantm/auto-update/hal-hardware-analyzer 
hal-hardware-analyzer: 3.2.6 -> 3.3.0
 2021-10-31 11:53:35 +00:00
Sergei Trofimovich 597eb07e00 yices: drop symlink hack, avoid ldconfig on linux 
Reported by sternenseemann as a failure on darwin:
https://github.com/NixOS/nixpkgs/pull/141541#discussion_r739634263

Instead of emulating symlink creation in `.nix` file let's create
them in Makefile.build directly in a way that can be upstreamed.
 2021-10-31 09:08:41 +01:00
Evils d44db8ddaa kicad: 5.1.10 -> 5.1.11 2021-10-30 06:32:39 +02:00
R. Ryantm 705e4006ae hal-hardware-analyzer: 3.2.6 -> 3.3.0 2021-10-29 22:20:48 +00:00
R. Ryantm 6282512ef7 dcm2niix: 1.0.20210317 -> 1.0.20211006 2021-10-29 09:34:20 +00:00
R. Ryantm 5ba5ff1a84 cytoscape: 3.8.2 -> 3.9.0 2021-10-29 09:08:26 +00:00
github-actions[bot] e7fbce41fc
Merge master into staging-next 2021-10-29 06:01:10 +00:00
R. Ryantm a5403b9a36 scotch: 6.0.4 -> 6.1.1 2021-10-29 03:59:24 +00:00
R. Ryantm d492837c98 betaflight-configurator: 10.7.0 -> 10.7.1 2021-10-29 03:14:38 +00:00
R. Ryantm 5f6bd8187b bcftools: 1.13 -> 1.14 2021-10-29 02:49:14 +00:00
R. Ryantm 760160e64d bcal: 2.2 -> 2.3 2021-10-29 02:44:23 +00:00
Martin Weinelt da1f248229 Merge remote-tracking branch 'origin/master' into staging-next 2021-10-28 19:51:45 +02:00
Sandro b25f4f082d
Merge pull request #143391 from eduardosm/remove-maintainer 2021-10-28 18:19:06 +02:00
Sandro Jäckel a3286ac6cb
gromacs: fix formatting 2021-10-28 16:47:06 +02:00
Sandro Jäckel face360c08
gromacs: replace lib.lists.optional with lib.optional 2021-10-28 16:46:13 +02:00
Eduardo Sánchez Muñoz 5fdab076f0 maintainers: remove eduardosm 2021-10-28 16:21:46 +02:00
Phillip Seeber e4d824f4e3 gromacs: bool switches for MPI and CUDA 2021-10-28 14:52:30 +02:00
github-actions[bot] ea4da560ff
Merge master into staging-next 2021-10-28 12:01:32 +00:00
Phillip Seeber 19e71dfa87 gromacs: 2020.4 -> 2021.3, cuda, mpi cleanups, performance tunings 
gromacs: dont build double cuda version


gromacs: propagate mpi
 2021-10-28 13:50:39 +02:00
Nikolay Korotkiy 89707c93aa
pcalc: enable on darwin 2021-10-28 12:47:11 +03:00
github-actions[bot] 160c71e060
Merge master into staging-next 2021-10-27 06:01:21 +00:00
Dmitry Kalinkin 4cdfe28fec
Merge pull request #142798 from veprbl/pr/sherpa_2_2_11 
sherpa: 2.2.10 -> 2.2.11
 2021-10-26 20:38:57 -04:00
github-actions[bot] 23c6bab47e
Merge master into staging-next 2021-10-27 00:01:25 +00:00
Sandro 673eb1eb65
Merge pull request #142795 from veprbl/pr/snakemake_6_10_0 2021-10-26 22:21:30 +02:00
github-actions[bot] 9a27efeb34
Merge master into staging-next 2021-10-26 18:01:19 +00:00
Mustafa Çalışkan 66ea992d48
fritzing: 0.9.6 -> unstable-2021-09-22 (#136142) 2021-10-26 17:23:21 +02:00
Dmitry Kalinkin b6ef9916e4
sherpa: 2.2.10 -> 2.2.11 2021-10-24 18:22:59 -04:00
Dmitry Kalinkin 49d19b7945
snakemake: 6.7.0 -> 6.10.0 2021-10-24 17:49:14 -04:00
Jonathan Ringer fc25d94010
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/jupyter-client/default.nix
	pkgs/development/python-modules/jupyterlab-git/default.nix
 2021-10-22 09:33:07 -07:00
Vincent Laporte 22e732d03c tamarin-prover: 1.6.0 → 1.6.1 2021-10-22 07:38:30 +02:00
Artturi 493094366b
Merge pull request #142164 from jbedo/last 
last: 1179 -> 1256
 2021-10-22 08:37:19 +03:00
Justin Bedő 4e83abb0cb
Merge pull request #142199 from jbedo/picard 
picard-tools: 2.26.2 -> 2.26.3
 2021-10-22 14:36:28 +11:00
Justin Bedő 0689e7368d
Merge pull request #142333 from NixOS/r-updates 
rPackages: update R, CRAN, and BIOC
 2021-10-22 14:33:46 +11:00
Sandro b41a876d6e
Merge pull request #141750 from superherointj/python3-alias-jupyter-client 2021-10-21 21:56:31 +02:00
github-actions[bot] 54a42ab846
Merge master into staging-next 2021-10-21 06:01:21 +00:00
Bobby Rong 85b417446a
Merge pull request #142239 from bcdarwin/update-abella 
abella: 2.0.6 -> 2.0.7
 2021-10-21 08:51:08 +08:00
github-actions[bot] 5808494271
Merge master into staging-next 2021-10-20 00:01:37 +00:00
figsoda d68053da0a
Merge pull request #142256 from evils/kicad-domain 
kicad: use new domain name
 2021-10-19 17:46:19 -04:00
Evils e2ae6cc0f4 kicad: use new domain name 
as the old one is now no longer controlled by the kicad organization
 2021-10-19 23:31:38 +02:00
Ben Darwin 3032353fcb abella: 2.0.6 -> 2.0.7 2021-10-19 13:25:44 -04:00
Vladimír Čunát 01df3cd7dd
Merge branch 'master' into staging-next 2021-10-19 19:24:43 +02:00
Justin Bedo f120d4daf4
picard-tools: 2.26.2 -> 2.26.3 2021-10-19 21:24:56 +11:00
Justin Bedo 08489c40ab
fastp: 0.22.0 -> 0.23.1 2021-10-19 21:09:05 +11:00
Justin Bedo f7414542d0
last: 1179 -> 1256 2021-10-19 13:23:14 +11:00
github-actions[bot] 8863d12326
Merge master into staging-next 2021-10-18 12:01:18 +00:00
Ryan Burns 073fe478e1
Merge pull request #140209 from balodja/openmodelica 
openmodelica: 1.17.0 -> 1.18.0
 2021-10-18 02:06:22 -07:00
Justin Bedo 71eeb7ee56
Merge remote-tracking branch 'origin/master' into r-updates 2021-10-17 21:41:51 +11:00
Justin Bedo 3a0bdda3d9
R: add myself to maintainers 2021-10-17 08:41:58 +11:00
Martin Weinelt a415d5dd2e Merge remote-tracking branch 'origin/master' into staging-next 2021-10-15 23:10:08 +02:00
Théo Zimmermann e242eef8a4 coq_8_14: 8.14+rc1 -> 8.14.0 2021-10-15 18:50:05 +02:00
superherointj 206f3ab323 pythonPackages.jupyter_client: renamed to jupyter-client 2021-10-15 07:51:23 -03:00
Artturi 6d65c1c56d
Merge pull request #141541 from trofi/fix-yices-links 2021-10-15 05:07:49 +03:00
Martin Weinelt adf4e67dd4 Merge remote-tracking branch 'origin/staging' into staging-next 2021-10-15 01:34:36 +02:00
Shadaj Laddad 9d02ea53de cadical: include C++ headers 2021-10-14 15:23:05 -07:00
Michael Raskin ea4c595210
Merge pull request #141612 from vbgl/leo2-1.7.0 
leo2: 1.6.2 → 1.7.0
 2021-10-14 11:01:18 +00:00
Peter Simons 476635afe1 Drop myself from meta.maintainers for most packages. 
I'd like to reduce the number of Github notifications and
review requests I receive.
 2021-10-14 11:01:27 +02:00
Vincent Laporte cafe9f88fc
leo2: 1.6.2 → 1.7.0 
Fix build with recent C++ compilers

Use a more recent OCaml (4.05)
 2021-10-14 09:45:49 +02:00
Alyssa Ross 851b719ac6 treewide: use stdenv.hostPlatform.extensions.sharedLibrary where appropriate 2021-10-13 17:39:37 +00:00
Sergei Trofimovich 0b2d3bbfcb yices: 2.6.3 -> 2.6.2 
2.6.3 is not a stable tag (and is really a 2.6.4 in disguise).
Failure is noticed by vbgl in https://github.com/NixOS/nixpkgs/pull/141241#issuecomment-942103854

The change downgrades from unstable to latest stable release and
adds a check for file presence to prevent upgrade that silently
breaks symlink.
 2021-10-13 17:58:26 +01:00
Théo Zimmermann 3437b543fd coq_8_14: init at 8.14+rc1 2021-10-13 10:44:09 +02:00
Vincent Laporte e31bc3d26a coq2html: 1.2 → 1.3 2021-10-13 10:15:05 +02:00
github-actions[bot] 0bb8cb9c7a
Merge staging-next into staging 2021-10-13 06:01:52 +00:00
Ryan Burns 2df1874125
Merge pull request #141430 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.44 -> 1.8.45
 2021-10-12 17:59:17 -07:00
R. RyanTM f9da99e40d mavproxy: 1.8.44 -> 1.8.45 2021-10-13 00:39:29 +00:00
github-actions[bot] e69f5a133f
Merge staging-next into staging 2021-10-13 00:02:00 +00:00
Sergei Trofimovich b18a746169
yices: 2.6.1 -> 2.6.3 (#141241) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-10-12 23:09:47 +02:00
Sandro 1aac6f3b28
Merge pull request #141302 from felixsinger/pkgs/gtkwave/update 2021-10-12 21:38:24 +02:00
github-actions[bot] 0cb186d33d
Merge staging-next into staging 2021-10-12 18:01:50 +00:00
Vincent Laporte 17e2fbf2dc alt-ergo: 2.4.0 → 2.4.1 2021-10-12 14:41:54 +02:00
github-actions[bot] 7af387291c
Merge staging-next into staging 2021-10-12 12:02:08 +00:00
Sandro 2017c3a883
Merge pull request #141301 from jbedo/samtools 2021-10-12 11:30:07 +02:00
github-actions[bot] 5065827878
Merge staging-next into staging 2021-10-12 00:02:05 +00:00
Felix Singer c1ecf6d2b4 gtkwave: 3.3.110 -> 3.3.111 
Update GTKWave to latest release. Also, reformat default.nix.

Signed-off-by: Felix Singer <felixsinger@posteo.net>
 2021-10-12 01:40:44 +02:00
Justin Bedo 02a1a2b3c8
samtools: 1.11 -> 1.13 2021-10-12 10:19:36 +11:00
Artturi d5ac63708f
Merge pull request #135133 from r-ryantm/auto-update/emuflight-configurator 2021-10-11 21:03:27 +03:00
github-actions[bot] 1b2b1c3d56
Merge staging-next into staging 2021-10-10 00:02:14 +00:00
Gabriel Ebner 9044534a8d elan: 1.0.7 -> 1.1.0 2021-10-09 20:06:10 +02:00
github-actions[bot] 73444b1e90
Merge staging-next into staging 2021-10-09 12:01:44 +00:00
Ryan Burns 5170bbc015
Merge pull request #140689 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.43 -> 1.8.44
 2021-10-09 00:43:10 -07:00
github-actions[bot] 7a3a25044d
Merge staging-next into staging 2021-10-09 00:02:05 +00:00
markuskowa 14ab975a71
Merge pull request #140975 from sheepforce/avogadro2-updates 
avogadro2: 1.94.0 -> 1.95.1
 2021-10-08 22:02:11 +02:00
Phillip Seeber aa02e7f828 avogadro2: initialise a translation repo 2021-10-08 14:43:13 +02:00
Phillip Seeber 181689dfea avogadro2: 1.94.0 -> 1.95.1 2021-10-08 14:26:19 +02:00
github-actions[bot] 5da3c99f54
Merge staging-next into staging 2021-10-08 12:02:03 +00:00
Gabriel Ebner be4d1ca79c
Merge pull request #140916 from andersk/lean 
lean: 3.32.1 → 3.33.0
 2021-10-08 10:37:22 +02:00
Anders Kaseorg 4ce09e0e06 lean: 3.32.1 → 3.33.0 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2021-10-07 18:54:06 -07:00
github-actions[bot] ae9f8ec1b6
Merge staging-next into staging 2021-10-07 00:02:11 +00:00
Justin Bedő 68f25d5a86
Merge pull request #140170 from marsam/r-hydra 
R: don't restrict hydraPlatforms
 2021-10-07 08:54:26 +11:00
R. RyanTM a1e297d282 mavproxy: 1.8.43 -> 1.8.44 2021-10-06 00:35:56 +00:00
github-actions[bot] 4bbe70b6f4
Merge staging-next into staging 2021-10-06 00:02:16 +00:00
Bruno Bzeznik fe36d93cea siesta: 4.1-b3 -> 4.1.5 2021-10-05 22:46:40 +02:00
github-actions[bot] b7725a001d
Merge staging-next into staging 2021-10-04 18:01:44 +00:00
figsoda 3109ff5765 treewide: avoid use of lib.optional with list in inputs 2021-10-04 13:02:42 -04:00
Narazaki, Shuji 4de6574fb8 kissat: init at 2.0.1 2021-10-04 08:45:36 +09:00
github-actions[bot] 23fbe4eb93
Merge staging-next into staging 2021-10-03 18:01:40 +00:00
Sandro 87180d88f9
Merge pull request #140102 from r-ryantm/auto-update/MAVProxy 2021-10-03 19:20:09 +02:00
github-actions[bot] 9960091b16
Merge staging-next into staging 2021-10-02 18:01:48 +00:00
Alex Martens 5430af2013 dwfv: init at 0.4.1 2021-10-02 09:03:37 -07:00
Vladimir Korolev 72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Mario Rodas 4662abd3b4 R: don't restrict hydraPlatforms 
The restriction of hydraPlatforms was added in [1: ef05fad51a], but
doesn't seem to be a real reason behind it. R is Free Software and it
take takes a few minutes to build so I believe it can be distributed by
Hydra.

1: 2014-05-04 ef05fad51a
   R: don't restrict meta.platforms to Linux; other architectures should build fine
 2021-10-01 04:20:00 +00:00
R. RyanTM e7ad746486 mavproxy: 1.8.42 -> 1.8.43 2021-10-01 00:38:44 +00:00
github-actions[bot] a92850904c
Merge staging-next into staging 2021-09-30 18:01:43 +00:00
Bobby Rong 8145828985
Merge pull request #134593 from r-ryantm/auto-update/star 
star: 2.7.8a -> 2.7.9a
 2021-09-30 22:39:05 +08:00
github-actions[bot] 2dfffe79b2
Merge staging-next into staging 2021-09-30 00:02:24 +00:00
Austin Seipp d474571392 symbiyosys: 2020.08.22 -> 2021.09.13 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-09-29 13:14:27 -05:00
github-actions[bot] ce4a8ae240
Merge staging-next into staging 2021-09-29 18:01:44 +00:00
Sandro 8f7fa26a78
Merge pull request #139309 from Baltoli/bump-z3 2021-09-29 15:00:38 +02:00
Thomas Tuegel 0e87e81ee5
Merge pull request #139764 from veprbl/pr/qtwrap_ismacho 
qt: use isELF and isMachO in wrapQtAppsHook
 2021-09-28 20:37:15 -05:00
Timo Kaufmann cb3342eec8
Merge pull request #139758 from collares/sage-threejs-path 
threejs-sage: install in expected location
 2021-09-28 20:05:18 +02:00
Mauricio Collares a5a7c33e77 threejs-sage: install in expected location 
Co-authored-by: Timo Kaufmann <timokau@zoho.com>
 2021-09-28 19:06:48 +02:00
Dmitry Kalinkin e0532475bc
treewide: remove darwin-only manual wrapQtApp invocations 2021-09-28 10:29:46 -04:00
Sandro 5b5fb57aed
Merge pull request #139745 from Ma27/bump-stellarium 2021-09-28 14:12:02 +02:00
Maximilian Bosch fbdf7d2206
stellarium: 0.21.1 -> 0.21.2 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.2
 2021-09-28 13:49:59 +02:00
Robert Schütz 54e1db2152
Merge pull request #138479 from dotlambda/proj-8.1.1 
proj: 7.2.1 -> 8.1.1
 2021-09-27 16:46:32 -07:00
Robert Schütz 98c8fc6fd0 gplates: 2.2.0 -> 2.3.0 2021-09-26 23:11:29 -07:00
Ryan Burns 4e1586c6ad
Merge pull request #139338 from r-burns/protobuf 
treewide: fixes for protobuf 3.18+
 2021-09-25 14:54:43 -07:00
Bruce Collie 3e213b8699 z3: 4.8.10 -> 4.8.12 2021-09-24 11:46:21 +01:00
R. RyanTM 5becb56f71
star: 2.7.8a -> 2.7.9a 2021-09-24 10:37:28 +08:00
Ryan Burns 40299257cc Merge branch 'master' into staging-next 2021-09-23 18:43:00 -07:00
Naïm Favier b2391a51d2 coq: add desktop file for coqide 2021-09-23 14:39:50 +02:00
Sandro 9f5d7fa703
Merge pull request #136526 from smancill/shogun-remove-svmlight 
shogun: remove non-distributable SVMlight code
 2021-09-23 14:11:12 +02:00
Ryan Burns 813c400edc cntk: fix build with protobuf 3.18+ 2021-09-23 02:16:17 -07:00
Bobby Rong c25465873c
Merge pull request #138022 from natsukium/blast/update 
blast: 2.11.0 -> 2.12.0
 2021-09-23 14:48:35 +08:00
Ryan Burns e12802213e caffe: fix build with protobuf 3.18+ 2021-09-22 21:57:13 -07:00
github-actions[bot] 796a5df129
Merge master into staging-next 2021-09-23 00:01:50 +00:00
Sandro 1d180608da
Merge pull request #138968 from hjones2199/kstars355 2021-09-22 22:32:28 +02:00
Guillaume Girol 4bc83aaffa
Merge pull request #136489 from ehmry/nimPackages 
nimpackages / buildNimPackage
 2021-09-22 18:35:38 +00:00
Hunter Jones 3ba268b73d kstars: 3.5.4 -> 3.5.5 2021-09-22 11:35:38 -05:00
markuskowa b4f1a1338f
Merge pull request #138512 from r-burns/csdp 
[staging-next] Revert "csdp: move gfortran to nativeBuildInputs"
 2021-09-20 12:18:40 +02:00
Alyssa Ross e2bb7997c4
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	nixos/doc/manual/release-notes/rl-2111.section.md
 2021-09-19 17:08:00 +00:00
Ryan Burns b23afbb866 Revert "csdp: move gfortran to nativeBuildInputs" 
We are not using gfortran as a native binary; we are using its lib.

Fixes build on darwin.

This reverts commit eabbf45b60.
 2021-09-19 02:35:27 -07:00
Bobby Rong 0fd8cc3908
treewide: switch from pantheon.maintainers to lib.teams.pantheon 2021-09-18 23:07:00 +08:00
github-actions[bot] 263bdbdad4
Merge master into staging-next 2021-09-18 06:01:19 +00:00
figsoda 0e575a459e
Merge pull request #137974 from r-ryantm/auto-update/bowtie 
bowtie: 1.3.0 -> 1.3.1
 2021-09-17 22:52:43 -04:00
Sebastián Mancilla e810fad47a shogun: remove non-distributable SVMlight code 
SVMlight uses a non-standard license [0] that doesn't allow distribution
without the author's permission:

> The software must not be modified and distributed without prior permission of the author.

So remove all code related to it when building the binary package.
Use upstream's own script to do it (which they use to create and
distribute their own Debian package), with a few fixes.

There is still the option of building from source with SVMlight enabled
with an override that sets the withSvmLight parameter.

If SVMlight is enabled set the license to unfree. Also fix the
deprecated gpl3 license to gpl3Plus.

[0]: https://github.com/shogun-toolbox/shogun/blob/shogun_6.1.4/doc/license/LICENSE_SVMlight.md
 2021-09-17 15:04:34 -03:00
github-actions[bot] a21275cdae
Merge master into staging-next 2021-09-17 18:01:14 +00:00
figsoda 715d551a10
Merge pull request #136637 from L-as/alliance 
alliance: 5.1.1 -> unstable-2020-12-04
 2021-09-17 12:47:55 -04:00
Las Safin 33390f6bc7
alliance: 5.1.1 -> unstable-2021-09-15 2021-09-17 16:17:23 +00:00
github-actions[bot] 2ad7b248e6
Merge staging-next into staging 2021-09-17 00:02:15 +00:00
Robert Scott c1dac4490e
Merge pull request #138061 from Stunkymonkey/switch-fetchFromGitLab 
quantum-espresso,postgresql11Packages.pg_ed25519: switch to fetchFromGitlab
 2021-09-16 23:53:23 +01:00
github-actions[bot] 85bd312fb6
Merge staging-next into staging 2021-09-16 12:02:04 +00:00
markuskowa 228e15e7cb
Merge pull request #138123 from markuskowa/fix-octopus 
octopus: add CPU optimization flags
 2021-09-16 13:25:47 +02:00
Markus Kowalewski bd69f3d627
octopus: add CPU optimization flags 2021-09-16 12:53:47 +02:00
Bobby Rong 12d38c57c3
Merge pull request #134133 from Kranzes/auto-update/SPAdes 
SPAdes: 3.15.2 -> 3.15.3
 2021-09-16 17:09:24 +08:00
Bobby Rong 77f92d23c7
Merge pull request #137608 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.3 -> 4.1.4
 2021-09-16 14:18:28 +08:00
Felix Buehler 64bac8e874 quantum-espresso: switch to fetchFromGitLab 2021-09-15 23:13:57 +02:00
github-actions[bot] 1c625bf844
Merge staging-next into staging 2021-09-15 18:01:59 +00:00
Dmitry Kalinkin d8ed39b309
Merge pull request #135525 from veprbl/pr/open_memstream_fmemopen_darwin_fix 
Add implemetations of open_memstream/fmemopen to be used on BSDs
 2021-09-15 11:49:55 -04:00
Dmitry Kalinkin 84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04 
root: 6.24.02 -> 6.24.06
 2021-09-15 11:35:07 -04:00
Tomoya Otabi 1e9bd43214 blast: 2.11.0 -> 2.12.0 2021-09-15 15:33:44 +00:00
github-actions[bot] 24a34e5706
Merge staging-next into staging 2021-09-15 12:01:34 +00:00
Michael Raskin 47eaf6727b
Merge pull request #137876 from r-ryantm/auto-update/opensmt 
opensmt: 2.1.0 -> 2.1.1
 2021-09-15 09:03:33 +00:00
R. RyanTM 7bf7c9b92b bowtie: 1.3.0 -> 1.3.1 2021-09-15 07:35:44 +00:00
github-actions[bot] 636ebe3a72
Merge staging-next into staging 2021-09-15 06:01:54 +00:00
Justin Bedő 9c4f65db4b
Merge pull request #137884 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.0 -> 2.26.2
 2021-09-15 04:59:06 +00:00
R. RyanTM e676fdcb90 picard-tools: 2.26.0 -> 2.26.2 2021-09-14 19:53:25 +00:00
R. RyanTM 1c9cbe8a05 opensmt: 2.1.0 -> 2.1.1 2021-09-14 18:44:37 +00:00
github-actions[bot] 95f24a8a57
Merge staging-next into staging 2021-09-14 18:01:40 +00:00
R. RyanTM 504529d628 horizon-eda: 2.0.0 -> 2.1.0 2021-09-14 10:46:32 +00:00
github-actions[bot] 04e48fbe4f
Merge staging-next into staging 2021-09-13 18:01:51 +00:00
adisbladis fcf5397793
Merge pull request #135905 from dukc/secondDmd2097 
D compiler update
 2021-09-13 11:36:55 -05:00
Ben Wolsieffer 03111112cc qgroundcontrol: 4.1.3 -> 4.1.4 2021-09-13 00:11:37 -04:00
github-actions[bot] dfd1161f35
Merge staging-next into staging 2021-09-13 00:02:22 +00:00
Sandro 11e504567d
Merge pull request #137454 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.41 -> 1.8.42
 2021-09-13 00:26:51 +02:00
github-actions[bot] fef6f602e6
Merge staging-next into staging 2021-09-12 18:01:50 +00:00
Daniël de Kok 6f2ce2a65e treewide: remove danieldk as maintainer from a set of packages 
I currently do not have much time to work on nixpkgs. Remove
myself as a maintainer from a bunch of packages to avoid that
people are waiting on me for a review.
 2021-09-12 14:42:12 +00:00
Sandro 83eef43893
Merge pull request #135906 from yl3dy/xoscope 
xoscope: 2.0 -> 2.3
 2021-09-12 16:15:41 +02:00
Sandro Jäckel e4a49641ae
openems: fix eval 2021-09-12 14:45:44 +02:00
R. RyanTM 2464f7ae0a mavproxy: 1.8.41 -> 1.8.42 2021-09-12 00:36:50 +00:00
github-actions[bot] d370d9ee99
Merge staging-next into staging 2021-09-11 18:01:51 +00:00
Sandro 22d08e62d9
Merge pull request #137382 from Xitian9/geogebra 2021-09-11 18:33:09 +02:00
Sandro 790559422e
Merge pull request #136823 from r-ryantm/auto-update/MAVProxy 2021-09-11 18:08:34 +02:00
Sandro 205c2ada66
Merge pull request #136967 from bzizou/obitools 2021-09-11 16:27:18 +02:00
Stephen Morgan 28b5133cce geogebra: 5-0-644-0 -> 5-0-662-0 2021-09-11 23:49:13 +10:00
github-actions[bot] 6188f2aeeb
Merge staging-next into staging 2021-09-11 06:01:28 +00:00
Guillaume Girol 1065a41d8d
Merge pull request #136369 from veprbl/pr/root5_gcc10_fix 
root5: fix for gcc10
 2021-09-10 19:54:29 +00:00
Hunter Jones bc19f8dd1e kstars: 3.5.3 -> 3.5.4 2021-09-07 13:04:31 -05:00
Bruno Bzeznik 3bd1b0ed0d obitools3: 3.0.0-beta14 -> 3.0.1b11 2021-09-07 09:38:41 +02:00
R. RyanTM a7277dd058 mavproxy: 1.8.40 -> 1.8.41 2021-09-06 00:37:54 +00:00
Emery Hemingway 323c503cba mosdepth: convert to buildNimPackage 2021-09-05 11:20:02 +02:00
Dmitry Kalinkin 0ec2acf51f
root: build with -Dimt=ON 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin 95b2d74bc5
root: re-enable unvendored LLVM 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin aedfb59c87
root: 6.24.02 -> 6.24.06 2021-09-03 12:41:04 -04:00
Markus Kowalewski 25ebbde3e1
sherpa: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 01ba299e53
elmerfem: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 9259691d58
dl-poly-classic: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 35a17a0cfe
scilab: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 74443bc786
jags: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski eabbf45b60
csdp: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski d5c38a0d5c
siesta: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski 9eb814fd96
quantum-espresso: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski eecadd3f3b
openmolcas: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Dmitry Kalinkin 0a312a356c
root5: fix for gcc10 2021-09-01 07:14:56 -04:00
Ate Eskola b2a39efa57 sambamba 0.8.0 -> 0.8.1 2021-08-31 12:37:49 +03:00
Michael Raskin df3f3ccc6d
Merge pull request #136250 from collares/sage-networkx 
sage: adapt tests for networkx 2.6
 2021-08-31 07:52:29 +00:00
Mauricio Collares 7194273c77 sage: adapt tests for networkx 2.6 2021-08-30 22:43:24 -03:00
schotts-fired 9ec4fb0cd1 R: add memory profiling compile option 2021-08-30 18:24:42 +02:00
davidak fe2d3b56e7
Merge pull request #136014 from veprbl/pr/snakemake_6_7_0 
snakemake: 6.6.1 -> 6.7.0
 2021-08-29 10:54:01 +02:00
Dmitry Kalinkin b8c5c06aab
snakemake: 6.6.1 -> 6.7.0 2021-08-28 02:18:38 -04:00
Diep Pham ac0b44b1ee
dcmtk: support darwin platform (#136005) 2021-08-28 02:00:18 -04:00
Alexander Kiselyov accd81c1b6 xoscope: fixed buildInputs 2021-08-27 17:49:54 +03:00
Alexander Kiselyov 27dcb4bd31 xoscope: 2.0 -> 2.3 2021-08-26 22:21:17 +03:00
davidak 1b78608c69
Merge pull request #135516 from bzizou/stacks 
stacks: Changed license to gpl3Plus
 2021-08-26 03:50:48 +02:00
Justin Bedo b1b57ec04e
fastp: 0.20.1 -> 0.22.0 2021-08-25 09:52:07 +10:00
Sandro 73ad08e512
Merge pull request #135481 from kzvi/lean-update 
lean: 3.31.0 -> 3.32.1
 2021-08-25 00:43:28 +02:00
Dmitry Kalinkin 9c8f6efc55
xfitter: enable WITH_YAML support on darwin 2021-08-24 18:21:41 -04:00
Ryan Mulligan 8c2e2ffe95
Merge pull request #135212 from r-ryantm/auto-update/stacks 
stacks: 2.55 -> 2.59
 2021-08-24 09:03:17 -07:00
Bruno Bzeznik a240cd9f4f stacks: Changed license to gpl3Plus 2021-08-24 09:47:24 +02:00
Ryan Mulligan 997f4452a4
Merge pull request #135255 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.7 -> 2.26.0
 2021-08-23 20:56:38 -07:00
kzvi befe89f3d7 lean: 3.31.0 -> 3.32.1 2021-08-23 15:43:00 -07:00
davidak d18866b1c2 nasc: 0.7.5 -> 0.8.0 2021-08-23 23:23:52 +02:00
Artturi f2f1718aae
Merge pull request #135404 from r-ryantm/auto-update/workcraft 2021-08-23 17:28:09 +03:00
Artturi 55fdaafe15
Merge pull request #135398 from r-ryantm/auto-update/verifast 
verifast: 19.12 -> 21.04
 2021-08-23 17:25:35 +03:00
R. RyanTM 6b086631c6 workcraft: 3.3.2 -> 3.3.5 2021-08-23 08:01:40 +00:00
R. RyanTM a73fc504b7 verifast: 19.12 -> 21.04 2021-08-23 07:29:27 +00:00
Sandro 00f31216e0
Merge pull request #130396 from collares/sage-9.4 
sage: 9.3 -> 9.4
 2021-08-22 21:26:12 +02:00
Sandro 607fea187f
Merge pull request #135262 from shnarazk/cadical-141 
cadical: 1.3.0 -> 1.4.1
 2021-08-22 20:01:59 +02:00
Sandro 354afc6ecd
Merge pull request #135285 from Mic92/fix-homepages 2021-08-22 18:30:31 +02:00
Bjørn Forsman 7f6cb5a226 eagle: put the desktop icon where it can be found 
Apparently $out/share/icons/ doesn't work anymore, but
$out/share/pixmaps/ do.
 2021-08-22 17:12:24 +02:00
Jörg Thalheim 11e5c3ac4b bowtie: fix homepage 2021-08-22 16:08:28 +02:00
Mauricio Collares 46c3703ec1 sage: 9.3 -> 9.4 2021-08-22 09:53:12 -03:00
Mauricio Collares 9be264795c pynac: import segfault fix 2021-08-22 09:53:12 -03:00
Mauricio Collares b565d30c47 maxima: 5.44.0 -> 5.45.0 2021-08-22 09:53:08 -03:00
Narazaki, Shuji 960ddb6f8f cadical: 1.3.0 -> 1.4.1 2021-08-22 20:46:34 +09:00
R. RyanTM 742cd80071 picard-tools: 2.25.7 -> 2.26.0 2021-08-22 10:47:38 +00:00
Michael Raskin fbfc876625
Merge pull request #135241 from r-ryantm/auto-update/opensmt 
opensmt: 2.0.1 -> 2.1.0
 2021-08-22 10:03:57 +00:00
R. RyanTM 3760bcfd58 opensmt: 2.0.1 -> 2.1.0 2021-08-22 09:30:15 +00:00
R. RyanTM 67c1256ddd stacks: 2.55 -> 2.59 2021-08-22 07:08:39 +00:00
R. RyanTM 0fb51f3bf1 emuflight-configurator: 0.3.6 -> 0.4.0 2021-08-21 22:59:43 +00:00
Sandro b2573f352e
Merge pull request #134578 from smancill/phase-hooks-use-strings 
treewide: ensure pre/post phase hooks are strings
 2021-08-21 14:49:30 +02:00
Sandro Jäckel 026fb18487
ginac: switch to pname + version, cleanup 2021-08-21 11:20:15 +02:00
Sebastián Mancilla 8f94a33b38 treewide: ensure pre/post phase hooks are strings 
Some derivations use lib.optional or lib.optionals when setting pre/post
phase hooks. Ensure the proper lib.optionalString is used.
 2021-08-20 19:08:42 -04:00
Sandro a9f66e941d
Merge pull request #134390 from smancill/colpack-darwin 
colpack: refactor builder and build on darwin
 2021-08-20 23:58:11 +02:00
Tom Repetti 1387ce732d openroad: init at 2.0 2021-08-20 10:16:03 -04:00
Sebastián Mancilla 50062cc371 colpack: refactor builder and build on darwin 
- Use autoreconfHook and set flags with configureFlags.
- Only enable OpenMP on Linux, so it can be built on Darwin.
- Do not install .la file. Other distros also remove them.
- Do not build examples.
- Install example sources into a proper location.
- Fixed license.
 2021-08-19 15:51:23 -04:00
Sandro ac9f41a782
Merge pull request #134393 from smancill/bump-lp-solve 
lp_solve: 5.5.2.5 -> 5.5.2.11
 2021-08-19 21:36:59 +02:00
Sandro 33a0810405
Merge pull request #134720 from cab404/pymole-2.5.0 
pymol: 2.3.0 -> 2.5.0
 2021-08-19 19:51:09 +02:00
Zhenya Vinogradov 6714723bfa sage: fix icon location in the kernel definition 
The icon location is incorrect, `doc` directory exists inside `src`
directory, but not on the top level.
 2021-08-19 12:20:35 +03:00
Vladimir Serov 8992ae0cff
pymol: 2.3.0 -> 2.5.0 2021-08-19 10:16:38 +03:00
davidak f2b906617d
Merge pull request #134361 from Stunkymonkey/why3-phases 
why3: deprecate phases
 2021-08-19 04:06:56 +02:00
Sebastián Mancilla 514c8569aa lp_solve: 5.5.2.5 -> 5.5.2.11 
- Use the generic builder and override build and install phases instead
  of using buildCommand and missing phases and hooks, like fixup.

- Fix build on Darwin by using the proper build script (ccc.osx).

  - Add cctools to build inputs because ccc.osx uses the libtool
    command.

  - The install_name of the library is not set so fix it with
    fixDarwinDylibNames.

- Install headers into the expected location $out/include/lpsolve
  instead of $out/include. This follows what other distro do.
 2021-08-17 23:20:47 -04:00
Ryan Mulligan ad59a67ec0
Merge pull request #134444 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.1 -> 2.25.7
 2021-08-17 16:47:31 -07:00
Artturi 8ba3c63144
Merge pull request #133998 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 21.02.0 -> 21.05.2
 2021-08-17 23:00:21 +03:00
Gabriel Ebner 65cafb6030
Merge pull request #134474 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.19.0 -> 3.20.1
 2021-08-17 21:32:08 +02:00
Artturi 4f36420d07
Merge pull request #134045 from r-ryantm/auto-update/minimap2 
minimap2: 2.17 -> 2.22
 2021-08-17 22:22:47 +03:00
Ryan Mulligan 6cae9fd0c5
Merge pull request #134472 from r-ryantm/auto-update/vowpal-wabbit 
vowpal-wabbit: 8.10.0 -> 8.11.0
 2021-08-17 11:18:02 -07:00
R. RyanTM 73b3e147ea openhantek6022: 3.2.3 -> 3.2.4 2021-08-17 10:33:56 -07:00
R. RyanTM cbd7e0dec1 qalculate-gtk: 3.19.0 -> 3.20.1 2021-08-17 16:04:54 +00:00
R. RyanTM 6d139ed34f vowpal-wabbit: 8.10.0 -> 8.11.0 2021-08-17 15:59:33 +00:00