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Author SHA1 Message Date
R. RyanTM fff7a7a862 picard-tools: 2.21.3 -> 2.21.6 2020-01-22 10:12:28 +00:00
DwarfMaster 227a3f4383 Renamed maintainer lucas8 -> dwarfmaster 2020-01-21 16:39:52 +10:00
Jonathan Ringer 4de137a77d samtools: 1.9 -> 1.10 2020-01-19 13:13:01 -08:00
Frederik Rietdijk bcd8c6b8dc Merge master into staging-next 2020-01-17 17:08:16 +01:00
Dmitry Kalinkin 430dfb8082
Merge pull request #77631 from smaret/gildas-202001a 
gildas: 20191201_a -> 20200101_a
 2020-01-17 10:23:28 -05:00
Anders Kaseorg 3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH 
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-01-15 09:47:03 +01:00
Frederik Rietdijk 2a88c3c302 Merge staging-next into staging 2020-01-15 09:23:28 +01:00
Will Dietz afe905246d nota: init at 1.0 
Fixes #77590.
 2020-01-14 15:16:21 -08:00
Sébastien Maret 0956fcab16
gildas: 20191201_a -> 20200101_a 2020-01-14 11:22:53 +01:00
Luka Blaskovic 991a7e041f pcalc: build with bison3 2020-01-13 21:35:19 +00:00
lewo 4ea7d13c5c
Merge pull request #77041 from filalex77/rink-0.4.5 
rink: 0.4.4 -> 0.4.5
 2020-01-11 09:35:16 +01:00
Jonathan Ringer 5961f211f3 python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00
Jörg Thalheim 01d93cbbe1
kicad: split version.nix & add update.sh (#77003) 
kicad: split version.nix & add update.sh
 2020-01-10 14:19:14 +00:00
Bruno Bzeznik f7a4e4a93a bayescan: init at 2.1 (#68191) 
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2020-01-09 12:38:53 -05:00
markuskowa 2aecfca22c
Merge pull request #77083 from r-ryantm/auto-update/gmsh 
gmsh: 4.4.1 -> 4.5.1
 2020-01-09 12:27:11 +01:00
Mario Rodas 2148e53664
Merge pull request #77160 from r-ryantm/auto-update/ngspice 
ngspice: 30 -> 31
 2020-01-09 05:13:15 -05:00
Mario Rodas 6f79952429
Merge pull request #77169 from r-ryantm/auto-update/pcb 
pcb: 4.2.0 -> 4.2.1
 2020-01-09 05:09:50 -05:00
Evils 2607c4b9f9 kicad: split version.nix & add update.sh 
update.sh generates version.nix
  by default only updates kicad-unstable
  several options (can be combined)
    all, update to latest tag and master
    clean, generate versions.sh from scratch
    commit, make a git commit
 2020-01-08 23:04:54 +01:00
Maximilian Bosch 8a6baaecb5
geogebra: 5-0-569-0 -> 5-0-570-0 2020-01-07 23:26:31 +01:00
Luis Pedro Coelho fdfebafc10 blast: init at 2.10.0 (#61430) 
Co-authored-by: Pavel Chuprikov <pschuprikov@gmail.com>
 2020-01-07 20:14:18 +01:00
Markus Kowalewski a74b248f06
openmolcas: 18.09 -> 19.11 2020-01-07 15:36:59 +01:00
R. RyanTM cc98c9fbb2 pcb: 4.2.0 -> 4.2.1 2020-01-06 19:47:54 -08:00
Ryan Mulligan 8e0b0d08c2
Merge pull request #77125 from r-ryantm/auto-update/last 
last: 1042 -> 1045
 2020-01-06 18:51:09 -08:00
R. RyanTM 501f79aa9b ngspice: 30 -> 31 2020-01-06 17:40:29 -08:00
R. RyanTM 4bc4c70bc6 last: 1042 -> 1045 2020-01-06 11:46:28 -08:00
R. RyanTM 66156e04d5 gmsh: 4.4.1 -> 4.5.1 2020-01-06 06:33:28 -08:00
R. RyanTM 60fd879921 gromacs: 2019.4 -> 2020 2020-01-06 04:30:02 -08:00
Oleksii Filonenko bc8dc2bd0a
rink: add filalex77 to maintainers 2020-01-06 12:41:19 +02:00
Oleksii Filonenko 8d8ce109cb
rink: 0.4.4 -> 0.4.5 2020-01-06 12:39:32 +02:00
markuskowa b06114f078
Merge pull request #76311 from r-ryantm/auto-update/marvin 
marvin: 19.23.0 -> 19.27.0
 2020-01-04 12:24:48 +01:00
Gabriel Ebner 3604ae8394
Merge pull request #74259 from Evils-Devils/kicad-unstable 
kicad: cleanup, fix and update
 2020-01-03 20:14:07 +01:00
Frederik Rietdijk 7aa2b0215b Merge master into staging-next 2020-01-03 10:25:14 +01:00
Ryan Mulligan ec29bb50bf
Merge pull request #76208 from r-ryantm/auto-update/bcftools 
bcftools: 1.9 -> 1.10.2
 2020-01-02 16:42:27 -08:00
Evils e4786f3a1c kicad: update & cleanup 
minor simplification, fix base version

split i18n and get from gitlab

correct wrapper pythonpath, cleanup build output

update & fake git describe

correct base.nix to fit contributing.md
 2020-01-02 03:45:34 +01:00
Evils 6119ca27bb kicad: split wrapping and building 2020-01-02 03:45:34 +01:00
Evils d96992a21b kicad: unite unstable.nix with default.nix 
use latest libraries for unstable
move all revs and hashes to default.nix

thanks TQ for getting me through this blockage
 2020-01-02 03:45:34 +01:00
Evils 958d745fec kicad: use separated libraries 
switch source to gitlab as that's the new upstream source

use wrapper variables for everything but i18n
  add sym and fp templates to template path

update meta to reflect kicad's own language
  set license to AGPLv3, according to the source's LICENSE.README

reduce diff between default and unstable in preparation of merging

on debian gets "no module named 'math'"
  pcbnew 3d viewer is unusable (at least on my T410)
 2020-01-02 03:45:34 +01:00
Evils c61170168d kicad: switch to best try from unstable and 5.1.5 
make unstable use kicad-libraries
  still using a link in $out..., not sure that's a bad thing
  this allows setting that path in makeWrapperArgs
    can't use $out there

kicad-with-packages3d -> kicad and kicad-small

default to OCCT, OCE is outdated
  enforce OCCT on aarch64, where OCE is broken
  withOCE flag allows using OCE on non-aarch64
 2020-01-02 03:45:34 +01:00
Evils 6477f717e3 kicad-unstable: wrap 
use wxGTK31
  brings hiDPI support
  no python shell...
 2020-01-02 03:45:34 +01:00
Matt Huszagh d40747ed2c kicad: add python six package as dep 
This is needed for python scripting support.
 2020-01-02 03:45:34 +01:00
Matt Huszagh 1eb1b067dd kicad: python2 -> python3 2020-01-02 03:45:34 +01:00
Robin Gloster 95526382be
polymake: fix for structured attrs 2019-12-31 00:49:42 +01:00
Robin Gloster 5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Robin Gloster ab0cfd9e03
treewide: NIX_*_COMPILE -> string 2019-12-31 00:10:18 +01:00
Frederik Rietdijk 6d059becd3 Merge gcc-9 into staging (#68029) 2019-12-30 16:38:38 +01:00
Robin Gloster 65395a7105
treewide: installTargets is a list 2019-12-30 13:29:27 +01:00
Merijn Broeren 133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Robin Gloster 1065d80dd3
simgrid: *Flags are lists 2019-12-30 12:15:25 +01:00
Jan Tojnar ea4da9b5fa
Merge pull request #76674 from jtojnar/structured-attrs-masterable 
treewide: structured-attrs fixes
 2019-12-30 04:52:45 +01:00
Robin Gloster ac8eaa8507
treewide: fix *Flags 2019-12-30 04:50:37 +01:00
Franz Pletz 1a871b4382
minisat: 2.2.0 -> 2.2.1 2019-12-30 03:50:35 +01:00
Franz Pletz a88fc6be6d
strelka: fix build w/ gcc9 2019-12-30 03:18:19 +01:00
R. RyanTM 3d740ef586 verilator: 4.022 -> 4.024 2019-12-29 15:48:39 -06:00
Frederik Rietdijk eda01862c4
Merge pull request #75900 from jbedo/tebreak 
Tebreak, minia, last, bx-python, python-lzo
 2019-12-29 10:24:31 +01:00
Justin Bedo 11460d4cac
tebreak: init at 1.0 2019-12-29 17:16:10 +11:00
Ben Wolsieffer 660345d9fe mavproxy: 1.8.17 -> 1.8.18 2019-12-27 16:23:20 -08:00
Franz Pletz 81248e703c
xfitter: 2.0.0 -> 2.0.1, fix build w/ gcc9 2019-12-27 03:48:21 +01:00
Dmitry Kalinkin 984ceb1092
Merge pull request #76541 from veprbl/pr/root_python_wrap 
root: wrap python executables
 2019-12-26 12:29:12 -05:00
Dmitry Kalinkin 0b28198f23
root: wrap python executables 
In normal use of ROOT the PYTHONPATH is intended to be set when user
sources the thisroot.{,s}sh. We do that in the setupHook. This covers
the case when thisroot.sh was not sourced.
 2019-12-26 11:49:12 -05:00
Maximilian Bosch 9842c4b107
treewide: update which packages I'm currently maintaining 
Idea shamelessly stolen from 4e60b0efae.

I realized that I don't really know anymore where I'm listed as maintainer and what
I'm actually (co)-maintaining which means that I can't proactively take
care of packages I officially maintain.

As I don't have the time, energy and motivation to take care of stuff I
was interested in 1 or 2 years ago (or packaged for someone else in the
past), I decided that I make this explicit by removing myself from several
packages and adding myself in some other stuff I'm now interested in.

I've seen it several times now that people remove themselves from a
package without removing the package if it's unmaintained after that
which is why I figured that it's fine in my case as the affected pkgs
are rather low-prio and were pretty easy to maintain.
 2019-12-26 15:27:47 +01:00
Franz Pletz 77b6c3cd06
Merge remote-tracking branch 'origin/master' into gcc-9 2019-12-26 14:17:36 +01:00
Timo Kaufmann 8ac53ed0b1 python.pkgs.sympy: 1.4 -> 1.5 
Sage needs some doctest changes. The patch was included upstream.
Modelled after https://trac.sagemath.org/ticket/28911.
 2019-12-26 11:46:42 +01:00
Markus Kowalewski 63d62699e0
marvin: 19.25.0 -> 19.27.0 2019-12-25 15:11:16 +01:00
Jan Tojnar b1b26f8cf6
Merge pull request #76412 from jtojnar/pangox-compat-drop 
pangox_compat: drop
 2019-12-24 20:04:10 +01:00
Jan Tojnar aee453e5c9
openmodelica: remove pangox dependency 
It was probably just a dependency of `gtkglext` since I cannot find any reference to `pangox` in the repo.

But cannot verify build since it is broken.
 2019-12-24 16:13:13 +01:00
markuskowa 64b6fa927e
Merge pull request #76285 from r-ryantm/auto-update/jmol 
jmol: 14.30.0 -> 14.30.1
 2019-12-24 02:05:48 +01:00
R. RyanTM cf6d80a89d marvin: 19.23.0 -> 19.25.0 2019-12-23 13:15:32 -08:00
R. RyanTM 398f11945e jmol: 14.30.0 -> 14.30.1 2019-12-23 09:16:44 -08:00
R. RyanTM c905a6da5a bcftools: 1.9 -> 1.10.2 2019-12-22 20:00:29 -08:00
Maximilian Bosch 65061ab2ae
stellarium: 0.19.2 -> 0.19.3 
https://github.com/Stellarium/stellarium/releases/tag/v0.19.3
 2019-12-22 13:57:13 +01:00
Alyssa Ross 7887a81193
treewide: fix cargoSha256 (again) 
cargo-vendor output was changed in a4fc84de44.
 2019-12-20 20:08:53 +00:00
Justin Bedo 2191912274
minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
Justin Bedo 6741cff527
last: init at 1042 2019-12-20 11:27:02 +11:00
Jan Tojnar 048faed66a
pcb: 20140316 → 4.2.0 
* Long overdue update
* Clean up the expression
* Drop unneeded pangox_compat – it was probably needed before gtkglext propagated it.
 2019-12-19 00:47:20 +01:00
Justin Bedo 28a057a56b
bedtools: 2.29.1 -> 2.29.2 2019-12-18 10:39:25 +11:00
Mario Rodas 5e5ce79db4
Merge pull request #75807 from jbedo/strelka 
strelka: fix broken build
 2019-12-16 23:52:35 -05:00
Justin Bedo c3f09c33eb
strelka: fix broken build 2019-12-17 11:20:32 +11:00
Alex Branham 7af84afa2a R: 3.6.1 -> 3.6.2 
Closes https://github.com/NixOS/nixpkgs/pull/75587.
 2019-12-16 18:56:49 +01:00
Florian Klink 0380ed20db
Merge pull request #75657 from flokli/gtkwave-gtk3 
gtkwave: build with gtk3
 2019-12-15 15:07:07 +01:00
Renaud 2a1a4cad38
Merge pull request #75388 from Lassulus/xplanet 
xplanet: 1.3.0 -> 1.3.1
 2019-12-15 14:57:48 +01:00
lassulus 3772d04e1c xplanet: 1.3.0 -> 1.3.1 2019-12-15 14:02:36 +01:00
Florian Klink ac1a5ac2db gtkwave: build with gtk3 
gtkwave ships a gtk3 flavour on sourceforge. let's use that one.
 2019-12-15 03:54:35 +01:00
Austin Seipp 367676ce82
z3: 4.8.5 -> 4.8.7 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-12-14 20:33:59 -06:00
Ben Wolsieffer bd9549baa9 mavproxy: init at 1.8.17 2019-12-14 11:00:34 -08:00
Vincent Laporte 856d0a44ec
Merge pull request #75141 from vbgl/coq-8.11β1 
coq_8_11: init at 8.11+β1
 2019-12-14 19:13:40 +01:00
Dmitry Kalinkin b6d8873825 root: 6.12.06 -> 6.18.04 
Also switch to python3.
 2019-12-14 01:28:27 -08:00
Timo Kaufmann ce013bb430
Merge pull request #75613 from timokau/brial-1.2.6 
brial: 1.2.5 -> 1.2.6, pybrial: use brial src
 2019-12-13 21:47:50 +01:00
Timo Kaufmann 6a800927bb pybrial: 1.2.3 -> 1.2.5, directly use the brial src 
The pybrial package is a bit awkward. It doesn't have its own top-level
attribute, since it has a cyclic dependency with sage. That's one of the
reasons why it rarely gets updated. Its distributed along with brial, so
its best to keep the versions synchronized. The easiest way to do this
is to just re-use the source of brial.
 2019-12-13 20:29:16 +01:00
Robert Scott c676063047 btor2tools: correct meta information 2019-12-12 10:37:02 -06:00
Robert Scott b9185a96be boolector: add patch for CVE-2019-7560 2019-12-12 10:37:02 -06:00
markuskowa 3922a30090
Merge pull request #75416 from jbedo/bedtools 
bedtools: 2.29.0 -> 2.29.1
 2019-12-10 23:58:03 +01:00
Justin Bedo 50fbca4bfc
bedtools: fix clang builds 2019-12-11 09:27:57 +11:00
Gabriel Ebner 5f1790101f Merge branch 'auto-update/libqalculate' 2019-12-10 17:38:25 +01:00
Gabriel Ebner 12d9b6929c qalculate-gtk: 3.5.0 -> 3.6.0 2019-12-10 17:34:29 +01:00
Justin Bedo 592d288aa2
bedtools: 2.29.0 -> 2.29.1 2019-12-10 13:24:27 +11:00
R. RyanTM 13c757e69c snakemake: 5.7.4 -> 5.8.1 (#74637) 2019-12-09 20:47:24 +01:00
Robert Scott 2611887c2e lingeling: enable for darwin 2019-12-08 18:32:04 +00:00
Robert Scott dc6233b972 aiger: enable for darwin 2019-12-08 18:31:49 +00:00
Renato Alves e18fb092f1 kssd: init at 1.0 2019-12-08 16:48:59 +01:00
R. RyanTM b3262d2284 eagle: 9.5.0 -> 9.5.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
 2019-12-08 15:16:53 +01:00