alioth/nixpkgs
3
0
Fork 0
forked from mirrors/nixpkgs
Code Releases Activity
223567 commits 217 branches 121 tags 4.5 GiB
Commit graph

3425 commits

Author SHA1 Message Date
Dmitry Kalinkin 99a236b477
Merge pull request #83914 from cgevans/gwyddion-darwin 
gwyddion: support darwin
 2020-04-01 21:44:21 -04:00
Constantine Glen Evans cacbbe92bf
gwyddion: add darwin support 
Gwyddion will build on Darwin, but gnome2.gtkglext is broken there,
and so I am disabling it as an optional dependency here when building
on Darwin.
 2020-04-01 17:50:36 -07:00
R. RyanTM 92c8881358 picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
Timo Kaufmann 83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu 
cemu: init at 1.3
 2020-03-31 15:17:33 +00:00
R. RyanTM 3017e6989f deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
R. RyanTM cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 (#83839) 2020-03-31 00:39:00 -04:00
R. RyanTM bd245a755f stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
Ryan Mulligan d8c21cb4bc
Merge pull request #83746 from r-ryantm/auto-update/marvin 
marvin: 20.6.0 -> 20.9.0
 2020-03-30 06:14:11 -07:00
R. RyanTM 1d349b8512 marvin: 20.6.0 -> 20.9.0 2020-03-30 04:02:45 +00:00
luc65r 8edd400bfb
rofi-calc: init at 1.6 (#83136) 
Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper

Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
 2020-03-30 01:18:56 +02:00
Maximilian Bosch 9e7c54325e
stellarium: 0.19.3 -> 0.20.0 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.0
 2020-03-29 17:56:35 +02:00
Jörg Thalheim d04396da8b
Merge pull request #82852 from Mic92/cross-build-rust-package 
[WIP] buildRustPackage: enable strictDeps
 2020-03-29 14:07:07 +01:00
Guanpeng Xu d2702c915f mathematica: 12.0.0 -> 12.1.0 2020-03-29 14:38:33 +02:00
Jörg Thalheim e841dce44a
rink: fix strict deps build 2020-03-29 12:37:25 +01:00
Constantine Glen Evans 59fbc7acba gwyddion: 2.48 -> 2.55 (and add options) 
Gwyddion has a large number of optional dependencies. In this update,
those dependencies have been added with options set mostly to true,
and an option (default false) for working Python 2.7 support in the
program and in Python has been added. I have also added myself as a
maintainer as no maintainer is currently set.
 2020-03-27 10:56:00 -07:00
Ryan Mulligan c669d2991b
Merge pull request #83464 from r-ryantm/auto-update/last 
last: 1047 -> 1060
 2020-03-27 07:34:18 -07:00
R. RyanTM bd3fbef804 last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
Ryan Mulligan 8c5f9d0200
Merge pull request #83390 from r-ryantm/auto-update/seaview 
seaview: 5.0 -> 5.0.2
 2020-03-26 03:10:56 -07:00
R. RyanTM 4a3ea14b5b seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
Austin Seipp 517fd073fc
xcircuit: 3.9.73 -> 3.10.12, maintain 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 17:46:15 -05:00
Austin Seipp 765b2fd866
mcy: 2020.03.16 -> 2020.03.21 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Austin Seipp 4808bef486
symbiyosys: 2020.02.11 -> 2020.03.24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Vincent Laporte 618bca7054 alt-ergo: 2.3.0 → 2.3.1 2020-03-24 20:43:06 -04:00
Mario Rodas b2df6d541d
lean: 3.7.0 -> 3.7.2 2020-03-22 04:20:00 -05:00
Mario Rodas baeb670ce2
Merge pull request #82610 from r-ryantm/auto-update/eagle 
eagle: 9.5.2 -> 9.6.0
 2020-03-20 06:21:30 -05:00
Vincent Laporte 8dddd8a07f ocamlPackages.camlp5: 7.10 → 7.11 2020-03-19 18:04:14 -07:00
Claudio Bley 39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer (#82925) 
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
 2020-03-19 13:05:54 +00:00
Austin Seipp 2ef42e07fd
mcy: 2020.02.05 -> 2020.03.16 
Now with working web UI dashboard -- but no working GUI (yet!)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp 5cd4fd5bc5
symbiyosys: 2020.02.08 -> 2020.02.11 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp 9b43cf3a00
yosys: 2020.02.25 -> 2020.03.16 
- Bump `abc-verifier` (2020.03.05)
  - Install `yosys-abc` symlink for tool compatbility
  - Various `yosys` expression cleanups

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:37 -05:00
Dmitry Kalinkin ebe5f10794
kicad: don't build versions with 3d on Hydra 
The hydraPlatforms have to be set on the kicad package itself, that can be
checked using:

  echo ":p { inherit kicad kicad-small kicad-unstable; }" | nix repl ./pkgs/top-level/release.nix

This commit disables build of all kicad variants that require downloading
packages3d, which currently fail on hydra with the "Output limit exceeded"
status. This leaves Hydra with only building the kicad-small, which will allow
us to cache the build of kicad-base as well as all libraries except of
packages3d.
 2020-03-16 19:45:04 -04:00
Dmitry Kalinkin 68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
R. RyanTM bafbfc5a06 eagle: 9.5.2 -> 9.6.0 2020-03-14 20:19:26 +00:00
zimbatm 001be890f7 folding@home: 6.02 -> 7.5.1 
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
 2020-03-14 13:01:26 -07:00
Frederik Rietdijk 5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R 
R: 3.6.2 -> 3.6.3
 2020-03-14 14:29:05 +01:00
Josef Kemetmüller 3a8d05747b qgroundcontrol: Fix build 
This silences some warnings to not run into "Log limit exceeded" on
hydra.
 2020-03-14 03:18:39 +00:00
Mario Rodas c935567de6 lean: 3.6.1 -> 3.7.0 2020-03-14 01:32:58 +00:00
wucke13 c24b9a57c4 getdp: 3.0.4 -> 3.3.0 2020-03-13 04:10:20 +00:00
R. RyanTM a58d091d8d verilator: 4.028 -> 4.030 2020-03-12 20:57:34 -05:00
Maximilian Bosch 76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0 2020-03-12 18:12:57 +01:00
Timo Kaufmann ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann c4ab541443 pari: backport bug fix 
https://trac.sagemath.org/ticket/29313#comment:4
 2020-03-12 12:24:35 +01:00
xaverdh 5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 (#82323) 
The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e), the version string was changed, but the hash was not.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2020-03-11 12:07:53 -04:00
Timo Kaufmann 1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann 0c875c28c6 symmetrica: 2.0 -> 3.0.1 
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

7cf91b3800
 2020-03-10 18:10:25 +01:00
Timo Kaufmann e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix 
sage: fix test suite with docutils 0.15
 2020-03-10 15:25:22 +00:00
Timo Kaufmann 7133577405 sage: fix test suite with docutils 0.15 
The better way to fix this would be to backport the upstream sphinx
patch:

faedcc48cc

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
 2020-03-10 13:15:41 +01:00
Timo Kaufmann 63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari 
pari: 2.11.2 -> 2.11.3
 2020-03-09 17:31:14 +00:00
Michael Raskin bbab73266d
Merge pull request #80719 from mucaho/feature/clingcon_init 
clingcon: init at 3.3.0
 2020-03-09 07:42:38 +00:00
mucaho 202c2a8eff clingcon: init at 3.3.0 2020-03-08 19:21:55 +01:00
Maximilian Bosch 84f862ed91
Merge pull request #81796 from JohnAZoidberg/satallax-gcc9 
satallax: Fix build with GCC9
 2020-03-08 16:12:40 +01:00
Gabriel Ebner d7a68e9bce
Merge pull request #82028 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.7.0 -> 3.8.0
 2020-03-08 13:31:00 +01:00
Frederik Rietdijk 0eb0ddc4db Merge staging-next into master 2020-03-08 08:11:01 +01:00
R. RyanTM e6f5bb8dc4 qalculate-gtk: 3.7.0 -> 3.8.0 2020-03-08 00:14:22 +00:00
Vincent Laporte dcfccdfc33
acgtk: 1.5.0 → 1.5.1 (#81539) 
Co-authored-by: Jon <jonringer@users.noreply.github.com>
 2020-03-07 09:56:18 +01:00
R. RyanTM 6528554396 pari: 2.11.2 -> 2.11.3 2020-03-07 02:43:40 +00:00
Gabriel Ebner 8428f5bb4a elan: v0.8.0 tag was force-pushed by upstream 2020-03-06 15:35:37 +01:00
Gabriel Ebner 70e5428d66 elan: 0.7.5 -> 0.8.0 2020-03-06 14:28:36 +01:00
Joachim Breitner 2d2a5a9b63
js_of_ocaml: 3.4.0 -> 3.5.2 (#75766) 
drive-by contributions, as I was playing around with this (it has better
support for the `num` library, it seems.)

js_of_ocaml: 3.4.0 -> 3.5.2
ocamlPackages.js_of_ocaml-ppx_deriving_json: use ppxlib-0.12.0
ocamlPackages.eliom: 6.8.0 → 6.10.1
ocamlPackages.ocsigen-toolkit: 2.2.0 → 2.5.0
ocamlPackages.ocsigen-start: 2.7.0 → 2.16.1

Co-authored-by: Vincent Laporte <Vincent.Laporte@gmail.com>
 2020-03-06 07:42:04 +01:00
Frederik Rietdijk 188c3a4d03 Merge staging-next into staging 2020-03-06 07:09:30 +01:00
Mario Rodas 7597bdd59b
Merge pull request #81783 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.2 -> 4.5.4
 2020-03-05 08:31:38 -05:00
Mario Rodas 1196a5c7a7
Merge pull request #81722 from r-ryantm/auto-update/workcraft 
workcraft: 3.2.5 -> 3.2.6
 2020-03-05 07:42:25 -05:00
Daniel Schaefer bc56175034 satallax: Fix build with GCC9 2020-03-05 05:16:49 +01:00
R. RyanTM 9974067129 gmsh: 4.5.2 -> 4.5.4 2020-03-05 00:20:08 +00:00
R. RyanTM adcdd7b0a7 gromacs: 2020 -> 2020.1 2020-03-04 23:10:39 +00:00
Jan Tojnar 1a44e325d2
Merge branch 'staging-next' into staging 2020-03-04 21:24:05 +01:00
R. RyanTM 86e6080daf workcraft: 3.2.5 -> 3.2.6 2020-03-04 13:41:09 +00:00
Mario Rodas 5760e001ca
Merge pull request #81706 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.21.8 -> 2.22.0
 2020-03-04 07:26:05 -05:00
R. RyanTM 343ec80712 picard-tools: 2.21.8 -> 2.22.0 2020-03-04 09:58:40 +00:00
Gabriel Ebner 0d470dc5ea
Merge pull request #81692 from r-ryantm/auto-update/lean 
lean: 3.6.0 -> 3.6.1
 2020-03-04 10:32:38 +01:00
R. RyanTM 5b833c08ef lean: 3.6.0 -> 3.6.1 2020-03-04 06:26:01 +00:00
Aiken Cairncross 3db82f6fc3 python3Packages.monosat: Fix hash 
PR #81562 inadvertently broke these builds
 2020-03-03 11:02:23 -08:00
markuskowa dbb9fab27f
Merge pull request #81604 from markuskowa/upd-octopus 
octopus: 9.1 -> 9.2
 2020-03-03 12:45:16 +01:00
R. RyanTM faa5c3bde3 R: 3.6.2 -> 3.6.3 2020-03-03 11:34:22 +00:00
markuskowa 4822d61252
Merge pull request #80977 from r-ryantm/auto-update/quantum-espresso 
quantum-espresso: 6.4.1 -> 6.5
 2020-03-03 11:09:30 +01:00
Markus Kowalewski eebd6fe75a
octopus: 9.1 -> 9.2 2020-03-03 10:54:23 +01:00
Aiken Cairncross 2148a154c6 python3Packages.monosat: Fix Python 3.8 build 2020-03-03 07:40:57 +01:00
Brenton Horne b07eb54048 marvin: 20.4.0 -> 20.6.0 2020-03-02 21:50:25 +01:00
Jan Tojnar f27031f48f
Merge pull request #81063 from NixOS/netpbm 
netpbm: 10.82.01 → 10.89.1
 2020-03-02 19:26:25 +01:00
scalavision dbb4826457 truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
Jan Tojnar 9555834399
netpbm: split into multiple outputs 2020-03-01 15:13:03 +01:00
Frederik Rietdijk 21b808cd76 Merge staging-next into staging 2020-02-29 15:29:45 +01:00
Benjamin Hipple ad30a30488 rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation 
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.

This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
 2020-02-28 18:54:23 -08:00
Matthieu Coudron 05b6836816 torchPackages, torch-repl: remove 
See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398

To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
 2020-02-28 20:56:42 +01:00
Austin Seipp 7e66ce29bf
mcy: init at 2020.02.05 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-02-27 21:52:15 -06:00
Austin Seipp 3d8efecda1
symbiyosys: fix calls to external programs 
48085826f broke symbiyosys when it needed to call `yosys-abc`: when
`ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built.

But in general `sby` was just calling programs out of the ambient
environment. Fix that for most programs it can invoke: it now has a
direct dependency on boolector, aiger, abc, yosys, etc.

This also does some other minor clean up.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-02-27 21:52:15 -06:00
Mario Rodas 79f057e2eb
lean: 3.5.1 -> 3.6.0 2020-02-26 18:00:00 -05:00
Dmitry Kalinkin b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a 
gildas: 20200101_a -> 20200201_a
 2020-02-25 10:26:18 -05:00
R. RyanTM 56d58ecb24 quantum-espresso: 6.4.1 -> 6.5 2020-02-24 19:40:14 +00:00
R. RyanTM 4080e7976e gtkwave: 3.3.103 -> 3.3.104 2020-02-24 11:43:54 -06:00
Linus Heckemann 0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix 
mrtrix: init at 3.0_RC3_latest
 2020-02-24 13:52:38 +01:00
Timo Kaufmann f4dbf4402b
Merge pull request #80759 from Thra11/fix-r 
Fix R
 2020-02-23 23:48:21 +00:00
Tom Hall ae9e09a2e1 R: fix build on aarch64 by removing a failing test 
I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
 2020-02-22 13:17:40 +00:00
Edward Tjörnhammar 9b6faedb18
shogun: 6.0.0 -> 6.1.4 
Also migrate to opencv3 to address #72739, the PR didn't build for me.
Disable testing and ccache since they were broken.

Co-authored-by: Robert Scott <code@humanleg.org.uk>
 2020-02-21 11:05:09 +01:00
Sébastien Maret 7667207f3d
gildas: 20200101_a -> 20200201_a 
- Upgrade gildas to the latest version

 - Remove a patch that has been included upstream

 - Re-enable parallel building (fixed upstream)
 2020-02-20 15:28:57 +01:00
Gabriel Ebner f098b0dd2c
Merge pull request #80576 from bhipple/u/rust-cargo-elan 
elan: upgrade cargo fetcher and cargoSha256
 2020-02-20 09:53:49 +01:00
Maximilian Bosch 7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0 2020-02-20 03:09:06 +01:00
Benjamin Hipple ed85c9981a elan: upgrade cargo fetcher and cargoSha256 
Infra upgrade as part of #79975; ran `nixpkgs-review wip` successfully.
 2020-02-19 18:17:27 -05:00
Tom Hall 4e5aeca90b R: Enable java support on all platforms 2020-02-19 22:57:41 +00:00
Ben Darwin 9a2cd20478 mrtrix: init at 3.0_RC3_latest 
This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.

Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
 2020-02-16 22:25:25 -05:00