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4685 commits

Author SHA1 Message Date
github-actions[bot] be7141706d
Merge master into staging-next 2021-05-31 02:05:27 +00:00
Sandro 6094bec3c3
Merge pull request #124997 from veprbl/pr/xfitter_format 
xfitter: remove `hardeningDisable = [ "format" ];`
 2021-05-31 00:56:26 +02:00
Dmitry Kalinkin b72b3c5571
xfitter: remove hardeningDisable = [ "format" ]; 
Not needed after f42aa7e1 ('cc-wrapper: set FC when langFortran is on')
 2021-05-30 18:34:35 -04:00
github-actions[bot] 2867d5301f
Merge master into staging-next 2021-05-30 19:15:10 +00:00
Mauricio Collares 2c7d2ce295 sageWithDoc: fix documentation symlinks 2021-05-30 13:51:15 -03:00
github-actions[bot] f385b431a7
Merge master into staging-next 2021-05-27 06:45:59 +00:00
R. RyanTM 089915f634 bowtie2: 2.4.3 -> 2.4.4 2021-05-26 23:43:08 -07:00
R. RyanTM 14018b71dd mavproxy: 1.8.36 -> 1.8.37 2021-05-26 23:42:35 -07:00
github-actions[bot] 0e7ab2d48d
Merge master into staging-next 2021-05-26 18:54:42 +00:00
Gabriel Ebner 4aa2e32246
Merge pull request #124507 from collares/olean-cache-misses 
lean: substitute release commit sha1 (so upstream oleans are compatible with nixpkgs lean)
 2021-05-26 18:34:56 +02:00
Mauricio Collares cbaf78cdaa lean: substitute release commit sha1 2021-05-26 11:53:55 -03:00
github-actions[bot] 6d73490cb4
Merge master into staging-next 2021-05-26 01:11:31 +00:00
Pavol Rusnak 2c3cbef68d
Merge pull request #120840 from prusnak/viennarna 
ViennaRNA: 2.4.17 -> 2.4.18
 2021-05-26 00:03:55 +02:00
Pavol Rusnak 4bda49e963
ViennaRNA: 2.4.17 -> 2.4.18 2021-05-26 00:01:06 +02:00
Ryan Mulligan e2d59eee64
Merge pull request #124094 from r-ryantm/auto-update/marvin 
marvin: 21.3.0 -> 21.9.0
 2021-05-25 12:42:45 -07:00
R. RyanTM cb70ce62ab marvin: 21.3.0 -> 21.9.0 2021-05-23 02:24:31 +00:00
Jonathan Ringer b9b9cdb87c
Merge remote-tracking branch 'origin/staging' into staging-next 2021-05-22 19:23:14 -07:00
Jonathan Ringer 11a9ac00fc
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
 pkgs/tools/networking/xh/default.nix
 2021-05-22 18:19:10 -07:00
Sandro Jäckel d6ff646b3f pythonPackages.smart_open: rename to smart-open 2021-05-22 15:02:50 -07:00
Stéphan Kochen c47425a230 sambamba: fix darwin build 2021-05-22 20:56:09 +02:00
github-actions[bot] d5714df652
Merge staging-next into staging 2021-05-22 06:21:58 +00:00
github-actions[bot] cc35c7fc85
Merge master into staging-next 2021-05-22 06:21:55 +00:00
Robert Scott bcc99b83d0 libpoly: fix darwin build 
issue reported upstream
 2021-05-21 20:21:20 -07:00
Michael Raskin d0fd8a029d
Merge pull request #123281 from r-ryantm/auto-update/jmol 
jmol: 14.31.38 -> 14.31.39
 2021-05-21 19:42:56 +00:00
Jonathan Ringer 6b15fdce86
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
 pkgs/shells/ion/default.nix
 pkgs/tools/misc/cicero-tui/default.nix
 2021-05-20 22:11:42 -07:00
Mauricio Collares 22c86a0466 sageWithDoc: fix static asset deduplication 2021-05-20 18:29:02 -07:00
Mauricio Collares 874d1aba74 sageWithDoc: update sagedoc.py test for sphinx 3.5 2021-05-20 18:29:02 -07:00
Mauricio Collares cd9e8e284c sage: fix deprecation warning from matplotlib upgrade 2021-05-20 18:29:02 -07:00
Jonathan Ringer 14f3686af1
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/applications/terminal-emulators/alacritty/default.nix
  pkgs/servers/clickhouse/default.nix
 2021-05-20 09:12:42 -07:00
markuskowa b0b97660af
Merge pull request #123667 from markuskowa/upd-molcas 
openmolcas: 20.10 -> 21.02
 2021-05-19 23:17:31 +02:00
Jonathan Ringer c1f8a15dac
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  nixos/doc/manual/release-notes/rl-2105.xml
  pkgs/tools/security/sequoia/default.nix
 2021-05-19 10:39:54 -07:00
Pavol Rusnak f7ed00be13
Merge pull request #123689 from prusnak/bcal 
bcal: cleanup package, enable aarch64-darwin build
 2021-05-19 17:47:35 +02:00
Pavol Rusnak 6996896b48
bcal: cleanup package, enable aarch64-darwin build 2021-05-19 16:36:17 +02:00
Timo Kaufmann 6cf6470429
Merge pull request #122624 from collares/pari-2.13 
pari: 2.11.4 -> 2.13.1, update sage test expectations
 2021-05-19 16:07:15 +02:00
Markus Kowalewski 40f276c07d
openmolcas: 20.10 -> 21.02 2021-05-19 13:44:46 +02:00
github-actions[bot] 7000ae2b9a
Merge master into staging-next 2021-05-19 00:55:36 +00:00
Stéphan Kochen 7c0c956a57 starspace: fix darwin build 2021-05-18 20:35:09 +02:00
Jonathan Ringer ca46ad3762
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/tools/package-management/cargo-release/default.nix
 2021-05-18 11:03:38 -07:00
Pavol Rusnak 6be706bbe5
Merge pull request #123503 from stephank/fix-samblaster-darwin 
samblaster: fix darwin build
 2021-05-18 18:55:29 +02:00
Jonathan Ringer f7a112f6c4
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/applications/graphics/emulsion/default.nix
  pkgs/development/tools/misc/texlab/default.nix
  pkgs/development/tools/rust/bindgen/default.nix
  pkgs/development/tools/rust/cargo-udeps/default.nix
  pkgs/misc/emulators/ruffle/default.nix
  pkgs/tools/misc/code-minimap/default.nix
 2021-05-18 08:57:16 -07:00
Stéphan Kochen 7e9451ffb3
rink: fix darwin build (#123501) 2021-05-18 10:34:25 -04:00
Stéphan Kochen 20f36556dc samblaster: fix darwin build 2021-05-18 13:41:51 +02:00
Sandro 64b7457313
Merge pull request #123329 from evils/kicad-symlink 2021-05-18 01:40:23 +02:00
Sandro f85bc843c2
Merge pull request #122759 from dotlambda/mono6 2021-05-18 01:25:35 +02:00
R. RyanTM 161b02937d gtkwave: 3.3.108 -> 3.3.109 2021-05-17 13:51:47 -07:00
R. RyanTM ea5ad2b8e0 gwyddion: 2.57 -> 2.58 2021-05-17 11:49:58 -07:00
Erik Bäckman 5b143ccc91
numworks-epsilon: 15.3.2 -> 15.5.0 (#122760) 
Co-authored-by: erikbackman <erikbackman@users.noreply.github.com>
 2021-05-17 19:16:51 +02:00
Sandro 83c5d21320
Merge pull request #123083 from stephank/fix-est-sfs-darwin 
est-sfs: fix darwin build
 2021-05-17 18:58:33 +02:00
Jonathan Ringer c227fb4b17
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/tools/rust/cargo-cache/default.nix
	pkgs/development/tools/rust/cargo-embed/default.nix
	pkgs/development/tools/rust/cargo-flash/default.nix
	pkgs/servers/nosql/influxdb2/default.nix
 2021-05-17 07:01:38 -07:00
Evils bed2e8ef28 kicad-unstable: 2021-05-13 -> 2021-05-16 2021-05-17 09:47:28 +02:00
Evils 9f6de20292 kicad: correctly handle share/metainfo and appdata 
fixes issue 123299

blindly linking unstable's metainfo resulted in a dangling symlink
this is still share/appdata in the stable package so i linked that
 2021-05-17 09:47:07 +02:00
Stéphan Kochen 04aa238c1a gnucap: broken on darwin 
Gnucap relies on LD_LIBRARY_PATH both in its build process and in code,
which Darwin does not understand.
 2021-05-16 23:51:10 -07:00
github-actions[bot] 3ff6965554
Merge master into staging-next 2021-05-17 06:22:23 +00:00
Austin Butler 66201e2c1d cntk: fix build 2021-05-16 20:03:06 -07:00
R. RyanTM 9682a2a496 jmol: 14.31.38 -> 14.31.39 2021-05-16 19:52:36 +00:00
github-actions[bot] 6cdac75d25
Merge staging-next into staging 2021-05-16 18:32:44 +00:00
github-actions[bot] 8c6d819143
Merge master into staging-next 2021-05-16 18:32:41 +00:00
Anderson Torres cf45c45605
Merge pull request #121588 from eduardosm/sip-rename 
pythonPackages.sip: rename to sip_4, pythonPackages.sip_5: rename to sip
 2021-05-16 13:31:55 -03:00
Jan Tojnar 684991c696
Merge branch 'master' into staging-next 
- Thunderbird 68 has been dropped on master.
- gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
 2021-05-16 15:34:51 +02:00
Vincenzo Mantova 4ef47f32d7 eukleides: use $CC instead of hardcoded gcc 2021-05-16 12:03:47 +01:00
Vladimír Čunát 9de0430aac
Merge #122322: eukleides: Fix build, expose tex package 2021-05-16 10:35:28 +02:00
Bjørn Forsman 3d18eddae2 pulseview: fix patch hash 2021-05-16 08:56:46 +02:00
R. RyanTM 9528bf9fd9 bowtie2: 2.4.2 -> 2.4.3 2021-05-16 02:53:03 -04:00
sophrosyne97 2558acf870 pulseview: fix build error 2021-05-16 08:50:47 +02:00
github-actions[bot] 9911b1c75b
Merge staging-next into staging 2021-05-16 01:01:01 +00:00
github-actions[bot] b484cef365
Merge master into staging-next 2021-05-16 01:00:58 +00:00
Sandro 6b5f106b05
Merge pull request #122930 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.2 -> 4.1.3
 2021-05-15 21:32:56 +02:00
Sandro 936dd70d45
Merge pull request #122791 from lopsided98/mavproxy-update 2021-05-15 21:31:03 +02:00
github-actions[bot] c10600230e
Merge staging-next into staging 2021-05-15 18:30:31 +00:00
github-actions[bot] f1b78f8618
Merge master into staging-next 2021-05-15 18:30:28 +00:00
Sandro b4034ccbc5
Merge pull request #119986 from evils/kicad-usage 2021-05-15 20:12:08 +02:00
github-actions[bot] 49ec716c04
Merge staging-next into staging 2021-05-15 12:25:36 +00:00
github-actions[bot] ec10b0958d
Merge master into staging-next 2021-05-15 12:25:33 +00:00
Stéphan Kochen d707979a73 est-sfs: fix darwin build 2021-05-15 12:10:05 +02:00
Stéphan Kochen acf640be7b elan: fix darwin build 2021-05-15 12:02:46 +02:00
Stefan Frijters 06e7dc2f43
eukleides: Update license 
See license section in the README.
 2021-05-15 10:18:06 +02:00
Stefan Frijters 30b5330e85
eukleides: Fix build, expose tex package 2021-05-15 10:18:06 +02:00
github-actions[bot] 78ae7ac75e
Merge staging-next into staging 2021-05-15 06:22:25 +00:00
Jonathan Ringer 0546e68ef7
Merge remote-tracking branch 'origin/master' into staging-next 2021-05-14 21:57:09 -07:00
Stéphan Kochen 2adca7ae14
cd-hit: fix darwin build (#123026) 2021-05-14 17:27:16 -04:00
Evils e2661b00f7 kicad: add sanitizeAddress & sanitizeThreads options 
only kicad 5.99 or later are affected
was briefly -DKICAD_SANITIZE=ON
are mutually exclusive according to a compiler error
 2021-05-14 09:03:53 +02:00
Evils e37d772beb kicad: avoid rebuild on date change 
the date changes more often than most of the inputs
the date can also change on the base without other changes
  this causes a substantial rebuild for no reason
 2021-05-14 09:03:53 +02:00
Evils 7dc05fed4f kicad: bunch of minor cleanup 
squash of the following

kicad: makeFlags: optional -> optionals

kicad: remove -1 in version string, no more patch

should have been removed in a52e974cff

kicad: remove berce as maintainer

kicad: gtk3 -> wxGTK.gtk

use wxGTK.gtk rather than gtk3

add graphviz as doxygen wants it (no idea if doxygen is required...)
  minor compilation warning

kicad: rearrange / sort inputs

separate optional deps and options

kicad: clear some configuration warnings

linux specific stuff that's wanted by something in config

kicad: fix opening bug report in firefox wayland

may be removed when kicad goes native?
 2021-05-14 09:03:53 +02:00
Evils 3fe839e78c kicad: 5.1.9 -> 5.1.10 2021-05-14 09:03:53 +02:00
Evils 7a69e69a0b kicad-unstable: 2020-12-23 -> 2021-05-13 2021-05-14 09:03:46 +02:00
zowoq 004f8cd986 Merge staging-next into staging 2021-05-14 16:32:43 +10:00
Evils b54dfb232e kicad-unstable: link through new /share/metainfo 2021-05-14 08:06:25 +02:00
Evils 552a5a900c kicad-unstable: set KICAD6 env vars 2021-05-14 08:06:25 +02:00
Evils 95de1291b2 kicad-unstable: use wxPython 4.1 2021-05-14 08:06:24 +02:00
github-actions[bot] bf5d8bb531
Merge master into staging-next 2021-05-14 00:58:11 +00:00
Ben Wolsieffer 6e3b082026 qgroundcontrol: 4.1.2 -> 4.1.3 2021-05-13 20:24:22 -04:00
hjones2199 036e234a66
siril: fix build with glib-2.68 dependency (#122874) 2021-05-13 15:03:29 -04:00
Ben Wolsieffer 09ac4d615a mavproxy: clarify license as gpl3Plus 
The README states: "MAVProxy is released under the GNU General Public License v3
or later"
 2021-05-12 22:51:36 -04:00
Ben Wolsieffer 7d652d0c23 mavproxy: 1.8.34 -> 1.8.36 2021-05-12 22:48:04 -04:00
Mauricio Collares 9847e84d55 pari: 2.11.4 -> 2.13.1, update sage test expectations 2021-05-12 21:21:14 -03:00
Robert Schütz d099e7558e mono: 5 -> 6 2021-05-12 21:32:40 +02:00
github-actions[bot] e2cf474986
Merge staging-next into staging 2021-05-12 06:21:36 +00:00
github-actions[bot] d8fb37f470
Merge master into staging-next 2021-05-12 06:21:33 +00:00
Mauricio Collares b413d3570a sage: 9.3.rc4 -> 9.3 2021-05-11 16:49:32 -03:00
Mauricio Collares f206ba8ab9 singular: replace local patches by upstream ones 2021-05-11 16:49:10 -03:00