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Author SHA1 Message Date
Florent C 762faa21a2 tlaps: 1.4.3 -> 1.4.5 
This updates tlaps to the most recent stable version and fixes the
template for the url from which the sources are fetched. Previously, the
tarball was fetched from the "current" remote directory from which old
versions are eventually removed. The package was therefore broken.
It also adds myself (florentc) as a maintainer.
 2022-02-16 15:19:51 +01:00
Artturi 83dc7a2714
Merge pull request #159808 from r-ryantm/auto-update/tlaplus 2022-02-16 15:53:15 +02:00
Mauricio Collares b38b641ff3 sageWithDoc: fix Sphinx warnings which break docgen 2022-02-15 22:37:34 -03:00
Ben Siraphob 521cfab34b
Merge pull request #157626 from siraben/formula-init 2022-02-15 18:38:41 -06:00
Sandro 5c5a8df724
Merge pull request #156420 from azuwis/transfig 2022-02-16 00:49:28 +01:00
7c6f434c 16fe911917
Merge pull request #160088 from r-ryantm/auto-update/jmol 
jmol: 14.32.6 -> 14.32.21
 2022-02-15 21:39:00 +00:00
Kevin Cox 4e883afc5a
Merge pull request #159226 from lorenzleutgeb/gradle 
gradle: 7.3.3 -> 7.4
 2022-02-15 15:26:18 -05:00
Ben Siraphob 7f94906083
formula: init at 2.0 2022-02-15 14:09:16 -06:00
Lorenz Leutgeb f7e01145af gradle: Update hashes of dependents for 7.4 2022-02-15 09:17:56 +01:00
Zhong Jianxin 507b23f0d1 chemtool: Set platforms to linux 2022-02-15 10:49:51 +08:00
R. Ryantm 099fefbceb jmol: 14.32.6 -> 14.32.21 2022-02-15 02:42:04 +00:00
Zhong Jianxin e8f3914985 treewide: Replace transfig with fig2dev 
Reasons:

- transfig never get upstream update since it was added to nixpkgs 2006,
  according to [fig2dev Debian changelog][1], upstream maintainership
  was taken over at 2016, and renamed to fig2dev.

- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
  transfig.

- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.

- One less package to maintain.

[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
 2022-02-15 10:13:56 +08:00
7c6f434c a6a1e14e52
Merge pull request #159741 from r-ryantm/auto-update/polymake 
polymake: 4.5 -> 4.6
 2022-02-14 20:52:03 +00:00
7c6f434c 117fdae4b6
Merge pull request #159351 from collares/sage-ipython-8 
sage: don't test for Cython source code in tracebacks (temporarily)
 2022-02-14 17:18:21 +00:00
Jan van Brügge 75f5b1f5b2
isabelle: Rebuild isabelle_setup.jar 
This jar contained a call to /usr/bin/env bash which was causing an
error during the build of the HOL session (which could be ignored) and
caused other errors during the development of https://github.com/NixOS/nixpkgs/pull/157515
 (which could not be ignored). This commit patches the java sources to
 call `bash` directly and rebuild the jar.
 2022-02-14 15:17:58 +01:00
Bobby Rong 8617a5a336
Merge pull request #159645 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.2.4 -> 3.2.5
 2022-02-14 19:58:50 +08:00
R. Ryantm e1f6e33d01 workcraft: 3.3.5 -> 3.3.6 2022-02-14 09:43:01 +00:00
R. Ryantm 240262f564 messer-slim: 3.7 -> 3.7.1 2022-02-14 00:46:29 +00:00
markuskowa e7a2652f31
Merge pull request #159311 from r-ryantm/auto-update/gmsh 
gmsh: 4.9.2 -> 4.9.4
 2022-02-13 11:48:17 +01:00
R. Ryantm 42d5cbb78e tlaplus: 1.7.1 -> 1.7.2 2022-02-13 10:33:51 +00:00
R. Ryantm 2220d35562 bada-bib: 0.3.0 -> 0.4.1 2022-02-12 22:22:46 -08:00
R. Ryantm 24b505484b cytoscape: 3.9.0 -> 3.9.1 2022-02-12 21:13:11 -08:00
R. Ryantm ac4ec1ef75 gretl: 2021d -> 2022a 2022-02-12 21:08:09 -08:00
R. Ryantm 154d72f526 ginac: 1.8.1 -> 1.8.2 2022-02-12 20:56:29 -08:00
R. Ryantm 36800803c5 gama: 2.16 -> 2.17 2022-02-12 20:54:56 -08:00
R. Ryantm 0948b62a1f polymake: 4.5 -> 4.6 2022-02-13 04:50:20 +00:00
R. Ryantm aa982c28cf kstars: 3.5.6 -> 3.5.7 2022-02-12 20:32:52 -08:00
Justin Bedő 2759d6f8d8
Merge pull request #159675 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.9 -> 2.26.10
 2022-02-13 09:53:20 +11:00
Justin Bedő 7ff9c00c4b
Merge pull request #159562 from r-ryantm/auto-update/mosdepth 
mosdepth: 0.3.2 -> 0.3.3
 2022-02-13 09:27:54 +11:00
Justin Bedő 28f5937aeb
Merge pull request #159411 from r-ryantm/auto-update/last 
last: 1256 -> 1260
 2022-02-13 09:25:49 +11:00
R. Ryantm 8a4946df2d picard-tools: 2.26.9 -> 2.26.10 2022-02-12 22:20:29 +00:00
R. Ryantm 80175b54cc openhantek6022: 3.2.4 -> 3.2.5 2022-02-12 20:37:00 +00:00
Robert Scott 83ea8999d4 gmsh: enable tests 2022-02-12 16:15:57 +00:00
Robert Scott 61dc066799 gmsh: enable for darwin 2022-02-12 16:13:53 +00:00
R. Ryantm 8bb7bc766f mosdepth: 0.3.2 -> 0.3.3 2022-02-12 14:31:47 +00:00
Mario Rodas 0ff383436d
Merge pull request #159009 from r-ryantm/auto-update/bcal 
bcal: 2.3 -> 2.4
 2022-02-12 08:39:47 -05:00
R. Ryantm 983beb2b8b marvin: 21.20.0 -> 22.3.0 2022-02-12 12:52:40 +00:00
7c6f434c bff729efd3
Merge pull request #158992 from collares/R-stackprotector 
R: disable stack protector on aarch64-darwin
 2022-02-12 11:32:56 +00:00
Kim Lindberger c7df3bf58c
Merge pull request #155108 from fedeinthemix/add-xyce-2 
Add Xyce 7.4 (second attempt)
 2022-02-12 11:34:10 +01:00
Federico Beffa 10b7f30936 xyce,xyce-parallel: init at 7.4 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com> and
                Kim Lindberger <kim.lindberger@gmail.com>
 2022-02-12 10:26:05 +01:00
R. Ryantm 6ca5bb6e20 last: 1256 -> 1260 2022-02-12 02:52:18 +00:00
Mauricio Collares c763432549 sage: don't test for Cython source code in tracebacks (temporarily) 2022-02-11 19:13:34 -03:00
R. Ryantm 772c6b674c gmsh: 4.9.2 -> 4.9.4 2022-02-11 18:31:28 +00:00
R. Ryantm 1631ffae8d cwltool: 3.1.20220204090313 -> 3.1.20220210171524 2022-02-11 12:44:06 -05:00
evils bb8a321187
kicad: 6.0.1 -> 6.0.2 (#159132) 2022-02-11 01:15:42 -05:00
Angus Trau 18592865d7 maintainers: update emilytrau 2022-02-11 04:45:03 +00:00
7c6f434c 06ff90f540
Merge pull request #159020 from collares/arb-2.22.1 
arb: 2.21.1 -> 2.22.1
 2022-02-10 23:56:18 +00:00
R. RyanTM b6869047c5
lepton-eda: 1.9.16-20210731 -> 1.9.17-20211219 
(#152772)
 2022-02-10 21:43:31 +01:00
R. Ryantm 288ba3f85b scilab-bin: 6.0.2 -> 6.1.1 2022-02-10 11:56:08 -08:00
Mauricio Collares b8c69782a2 sage: adapt tests to arb 2.22 2022-02-10 16:40:41 -03:00
R. Ryantm fa133a26f3 rofi-calc: 2.0.0 -> 2.1.0 2022-02-10 11:32:09 -08:00
R. Ryantm 172ba8b474 bcal: 2.3 -> 2.4 2022-02-10 19:05:57 +00:00
Mauricio Collares 4536186f18 R: disable stack protector on aarch64-darwin 2022-02-10 14:01:08 -03:00
Mauricio Collares 58f58c8de6 lean: 3.39.0 -> 3.39.1 2022-02-08 12:24:19 -03:00
Ben Siraphob 3594565a7e
Merge pull request #156629 from siraben/coq-mainprogram 
coq: add meta.mainProgram
 2022-02-06 21:43:01 +00:00
Ben Siraphob 6ad0e10dd3
coq: add meta.mainProgram 2022-02-06 15:42:47 -06:00
Ben Siraphob 33489310eb
Merge pull request #158358 from c0bw3b/fix/homepages 
A batch of homepage (and source) updates
 2022-02-06 20:02:50 +00:00
Renaud 2ddcc2b369 hisat2: update homepage 
and use SPDX 3.0 license identifier
 2022-02-06 15:10:53 +01:00
Renaud d968838c90 gravit: update homepage and source URLs 
and use SPDX 3.0 license identifier
 2022-02-06 15:10:47 +01:00
Renaud 3e5d286cc4 eagle7: update homepage 
www.cadsoftusa.com and www.cadsoft.de are gone
 2022-02-06 15:10:29 +01:00
R. RyanTM 1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 (#158272) 2022-02-05 15:14:21 -05:00
Sandro 63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts 2022-02-04 18:26:20 +01:00
R. Ryantm af3af2df32 cwltool: 3.1.20220124184855 -> 3.1.20220202173120 2022-02-03 20:06:12 -05:00
Timo Kaufmann 0371c7ba56
Merge pull request #157981 from collares/sage-fonttools-revert 
sage: no longer assume fonttools emits deprecation warnings
 2022-02-03 18:03:39 +01:00
Artturi 0f491bd7a3
Merge pull request #157264 from FliegendeWurst/disable-broken-parallel 2022-02-03 16:04:57 +02:00
Mauricio Collares 0ebdfab88b lean: 3.38.0 -> 3.39.0 2022-02-03 09:21:20 -03:00
Mauricio Collares 778b1f8b4f sage: no longer assume fonttools emits deprecation warnings 2022-02-03 08:28:22 -03:00
Bobby Rong 46a4949078
Merge pull request #157927 from r-ryantm/auto-update/vowpal-wabbit 
vowpal-wabbit: 8.11.0 -> 9.0.1
 2022-02-03 17:28:02 +08:00
R. Ryantm 6d957f73ab vowpal-wabbit: 8.11.0 -> 9.0.1 2022-02-03 02:08:33 +00:00
Сухарик 3f90b3a1e1 anders: init at 1.1.1 2022-02-02 12:31:53 +03:00
markuskowa 65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib 
bada-bib: init at 0.3.0
 2022-02-01 22:26:26 +01:00
Martin Weinelt 778d148959
Merge pull request #155061 from piegamesde/gnome 2022-02-01 20:53:10 +01:00
Bruno Bzeznik 77682cf879
shtns: init at 3.5.1 (#151061) 2022-01-31 21:28:05 +01:00
R. Ryantm d44e044d84 kallisto: 0.46.2 -> 0.48.0 2022-01-31 09:53:54 -08:00
Bruno Bzeznik b6fa4975cf
repseek: init at 9Sep2014 (#148017) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-31 14:59:32 +01:00
7c6f434c 9b76122d71
Merge pull request #140889 from collares/sage-9.5 
sage: 9.4 -> 9.5
 2022-01-31 13:24:26 +00:00
Robert Schütz a13fe11c59 sasview: 4.2.0 -> 5.0.4 2022-01-30 20:47:10 +00:00
Mauricio Collares 8ec9a32829 sageWithDoc: do not autodetect optional features when testing dochtml 2022-01-30 13:15:22 -03:00
Mauricio Collares cecbb55fb0 sage: 9.4 -> 9.5 2022-01-30 13:15:20 -03:00
Sandro a724f8dc29
Merge pull request #155897 from FliegendeWurst/key-2.10 2022-01-30 01:21:43 +01:00
piegames 9a2a3d0395 gfm: drop 
It does not appear to have an attribute that references it anymore?
(Not sure though, that name's hard to grep for)
 2022-01-29 18:09:16 +01:00
piegames 5ffbf9ed81 tilp2: drop 
While tilp2's libglade dependency is optional, it still has a hard dependency
on it via gfm
 2022-01-29 18:08:52 +01:00
markuskowa 01f1b41a7d
Merge pull request #156381 from r-ryantm/auto-update/bowtie2 
bowtie2: 2.4.4 -> 2.4.5
 2022-01-29 14:56:23 +01:00
FliegendeWurst a43431f376 alliance: disable parallel build 2022-01-29 11:40:09 +01:00
FliegendeWurst 48a133a066 key: add a desktop item 2022-01-29 10:14:54 +01:00
Vegard Strand Lende 41f927b433
verilator: 4.210 -> 4.218 (#157122) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-29 02:30:41 +01:00
Andrew Fontaine 3c0680b783
fahviewer: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:47:24 -05:00
Andrew Fontaine ba785adb28
fahcontrol: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:46:52 -05:00
Yipeng Sun 54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD (#157069) 2022-01-27 19:37:36 -05:00
Sandro 27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker 2022-01-27 14:06:36 +01:00
ajs124 3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip 
tulip: 5.2.1 -> 5.6.1
 2022-01-26 23:33:44 +01:00
Felix Buehler 09e3b7a570 treewide: remove all updateWalker/downloadURLRegexp 2022-01-26 21:46:08 +01:00
Felix Buehler ed7bf9452c treewide: remove *.upstream files from updateWalker 2022-01-26 21:46:07 +01:00
Gabriel Ebner b27b115b41
Merge pull request #154272 from jvanbruegge/isabelle-build-hol 
isabelle: Prebuild HOL session
 2022-01-26 16:37:18 +01:00
Dmitry Kalinkin f66b63a7cb
Merge pull request #156217 from smancill/shogun-fixes 
Shogun: use Python 3 and fix CMake targets
 2022-01-26 04:25:27 -05:00
R. Ryantm 6b3bf39220 cwltool: 3.1.20220119140128 -> 3.1.20220124184855 2022-01-25 21:56:09 -05:00
Vincent Laporte 8187f6500d tamarin-prover: install emacs-mode 2022-01-25 15:54:15 +01:00
Vincent Laporte 20e7213d16 coq_8_15: 8.15+rc1 → 8.15.0 2022-01-25 10:53:57 +01:00
Mauricio Collares 0aef6270cd sage: generate setup.cfg and requirements.txt for sagelib 2022-01-24 20:54:53 -03:00
Mauricio Collares 0a6b5115f6 singular: 4.2.0p2 -> 4.3.0 2022-01-24 20:54:53 -03:00