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Author SHA1 Message Date
Timo Kaufmann 2fbde72556
sage: add tkinter as matplotlib backend (#51032) 
Fixes #50959.
 2018-11-25 17:38:45 +01:00
Timo Kaufmann 98c94d3d7d sage: add jupyter notebook support 
Fixes #48544.
 2018-11-25 15:54:31 +01:00
Timo Kaufmann 0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor 
Sage refactor
 2018-11-24 23:59:28 +01:00
Timo Kaufmann a0723f1285 sage: don't fix node version 2018-11-24 23:14:38 +01:00
Timo Kaufmann e28a8ed287 sage: add some flexibility to the test runner 
Make it possible to run individual tests. This is very useful while
git-bisecting.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 21f9123ea6 sage: remove openblas hack 
The pc files have since been included into the openblas package.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 3832ddedb9 sage: refactor 2018-11-24 23:14:33 +01:00
c0bw3b 0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Timo Kaufmann 9b4a518465 sage: drop known-padics-failure patch 
The failure was not observed for a while and is probably fixed now.
 2018-11-24 19:01:57 +01:00
Timo Kaufmann ca6475b5e8 sage: drop unused patches 2018-11-24 19:01:57 +01:00
Gabriel Ebner 4e1323a0cf vampire: fix nondeterministic hash 
Probably related to #8567
 2018-11-22 14:15:55 +01:00
Michael Raskin 6fe39605df polymake: init at 3.2r4 2018-11-22 12:29:14 +03:00
worldofpeace 2e70b40f58
Merge pull request #49376 from dpaetzel/package-netlogo 
NetLogo: init 6.0.4
 2018-11-21 21:37:01 -05:00
Gabriel Ebner f505340252 iprover: 2.5 -> 2018_Jul_24_11h 2018-11-21 12:15:48 +01:00
David Pätzel fa623ad828 netlogo: init 6.0.4 2018-11-21 09:38:22 +01:00
markuskowa 0e98312b72
Merge pull request #50734 from r-ryantm/auto-update/gromacs 
gromacs: 2018.3 -> 2018.4
 2018-11-20 22:14:05 +01:00
Frederik Rietdijk fd26e7be2a Merge master into staging-next 2018-11-20 11:47:26 +01:00
Renaud 6550c0275e
Merge pull request #50703 from r-ryantm/auto-update/ltl2ba 
ltl2ba: 1.2b1 -> 1.2
 2018-11-19 22:21:52 +01:00
luzpaz 0ec2af3736
gmsh: 4.0.4 -> 4.0.5 
Manually updated
 2018-11-19 11:12:38 -05:00
R. RyanTM 08a0192340 gromacs: 2018.3 -> 2018.4 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
 2018-11-19 06:47:47 -08:00
R. RyanTM 5648699f6c ltl2ba: 1.2b1 -> 1.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ltl2ba/versions
 2018-11-19 02:28:38 -08:00
Frederik Rietdijk e343a85cfb Merge master into staging-next 2018-11-19 09:55:32 +01:00
Jörg Thalheim 1282ba6ac4
Merge pull request #50554 from r-ryantm/auto-update/verilator 
verilator: 4.004 -> 4.006
 2018-11-18 12:18:45 +00:00
Frederik Rietdijk 63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
R. RyanTM ee521455da verilator: 4.004 -> 4.006 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2018-11-18 00:14:21 -08:00
Renaud 44f24a1b8c
Merge pull request #50474 from Pneumaticat/boinc-update 
boinc: 7.8.0 -> 7.14.2
 2018-11-17 12:03:09 +01:00
Jörg Thalheim 131f2e93b6
sage: unpin nodePackage version 2018-11-16 21:24:25 +00:00
Kevin Liu c93b16829c
boinc: 7.8.0 -> 7.14.2 2018-11-16 15:52:22 -05:00
Ben Darwin cb6d819b93 niftyseg: init at 1.0.0 2018-11-16 12:29:29 -05:00
Ben Darwin 6aa3deeb50 niftyreg: init at 1.3.9 2018-11-16 12:24:53 -05:00
Jörg Thalheim 218f12db70
Merge pull request #50324 from asymmetric/solc 
solc: 0.4.25 -> 0.5.0
 2018-11-15 21:26:32 +00:00
Jörg Thalheim abb0c81190
z3: restrict to x86_64 
it uses x86-only header:

include <immintrin.h>
          ^~~~~~~~~~~~~
compilation terminated.
src/sat/sat_probing.cpp
make: *** [Makefile:182: util/mpz.o] Error 1
make: *** Waiting for unfinished jobs....
src/sat/sat_parallel.cpp
builder for '/nix/store/vd2wkhic8g77izxv659ackh6hcaamic3-z3-4.8.1.drv' failed with exit code 2
cannot build derivation '/nix/store/h5imnjsf31c45l558gw66vyzb0ickc1m-solc-0.5.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/h5imnjsf31c45l558gw66vyzb0ickc1m-solc-0.5.0.drv' failed
 2018-11-15 21:25:53 +00:00
Piotr Bogdan 5d0eeeee38 coq2html: switch to default make 2018-11-15 17:41:25 +00:00
Gabriel Ebner b1c149d47a tptp: use urls instead of url 
nix-prefetch-url breaks if the url argument to fetchurl is a list.
 2018-11-15 15:56:18 +01:00
Gabriel Ebner b3844d00f6 tptp: 7.1.0 -> 7.2.0 2018-11-15 15:50:48 +01:00
Renaud 650036f022
Merge pull request #50359 from jfrankenau/gurobi-java 
gurobi: install Java library files
 2018-11-15 14:13:47 +01:00
Johannes Frankenau b4e13e6257 gurobi: install Java library files 2018-11-14 19:38:18 +01:00
Jörg Thalheim 987bd62232
Merge pull request #50232 from wucke13/master 
qgroundcontrol: fixes #49870
 2018-11-14 17:10:05 +00:00
Renaud 7ca9d67948
Merge pull request #50102 from r-ryantm/auto-update/gp2c 
gp2c: 0.0.11 -> 0.0.11pl1
 2018-11-14 16:07:49 +01:00
wucke13 c26b42be74 qgroundcontrol: fixes #49870 
The `.desktop` referenced a non existent script to run `QGroundControl`. This commits adds a `sed` command, which replaces the non existent script by the name of the `QGroundControl` binary in the relevant `.desktop` file.
 2018-11-14 13:12:20 +01:00
markuskowa f597a88542
Merge pull request #50101 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.2 -> 4.0.4
 2018-11-14 12:46:48 +01:00
Markus Kowalewski 644ab709e7
gmsh: restrict platform to x86_64-linux 2018-11-14 12:33:37 +01:00
Markus Kowalewski ced40eabfd
gmsh: use openblas instead of atlas/lapack 
* openblas is properly recognized by cmake
* the cmake patch is no longer neccessary
 2018-11-14 11:41:46 +01:00
Matthew Bauer 2e18ba6c5a
Merge pull request #49776 from matthewbauer/atlas-remove 
atlas: remove
 2018-11-13 19:18:35 -06:00
markuskowa 2823b5e698
Merge pull request #46667 from costrouc/costrouc/lammps-update 
lammps: update, hoomd-blue, dl_poly: init
 2018-11-13 21:00:02 +01:00
Markus J. Ankenbrand bf05da0967 hmmer: 3.1b2 -> 3.2.1 (#50284) 
This version was released in June 2018 and has many bug fixes
and improvements compared to the previous version from 2015.
See: https://cryptogenomicon.org/2018/06/07/hmmer-3-2-release/
 2018-11-13 15:43:44 +01:00
Frederik Rietdijk daf3297cb4 Merge master into staging-next 2018-11-12 18:59:08 +01:00
Peter Simons 22a802584f
Merge pull request #50179 from Thra11/r-without-jdk 
R: Remove jdk dependency on aarch32/64
 2018-11-12 12:42:39 +01:00
Frederik Rietdijk 7863aae5b2 Merge master into staging-next 2018-11-11 08:59:44 +01:00
markuskowa 45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00