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310 commits

Author SHA1 Message Date
Joachim F f0dbbdf970
Merge pull request #51581 from joachifm/rWrapper-local-runCommand 
Implement R wrappers as local-only runCommand
 2018-12-07 09:17:44 +00:00
Christian Kauhaus 3b445042ac rPackages.littler: fix build (#51282) 
littler gives a wrapped called `r` (or `lr` for non-case-preserving
systems like Darwin) which works as shebang or pipe target.

The build was completely broken before (missing deps).

Symlink executables and manpage into standard locations so that this
packages also works in `environment.systemPackages`.
 2018-12-06 17:22:31 +01:00
Joachim Fasting 21d83e5b11
rstudioWrapper: use runCommand, local build only 
This seems more appropriate for a wrapper generator.
 2018-12-05 20:59:41 +01:00
Joachim Fasting d2b467a2de
rWrapper: use runCommand, local build only 
This seems more appropriate for a wrapper generator.
 2018-12-05 20:59:35 +01:00
Timo Kaufmann 63b39af496
pythonPackages.rpy2: various fixes (#51084) 
- make sure libreadline is found at runtime
- make sure python libraries are found at runtime
- add libraries necessary to pass the testsuite and standard libraries
 2018-11-27 18:24:37 +01:00
Massimo Redaelli 5afe1e7c70 rstudio: fix qt plugins not found 2018-11-23 23:10:29 +01:00
Averell Dalton 25e68e3048 r-ps: patchShebangs in ./configure to fix build 2018-11-02 23:02:04 +01:00
Peter Simons c9e1380626 r-nloptr: fix build by adding pkgconfig 2018-11-02 17:50:18 +01:00
Peter Simons 9b63cc6313 r-rlang: patch shebang in configure script to fix the build 2018-11-02 17:50:18 +01:00
Tom McLaughlin cac5c9401e R: update CRAN and BIOC package sets 
Closes https://github.com/NixOS/nixpkgs/pull/49430.
 2018-11-02 17:50:18 +01:00
Rob Vermaas 3f719b0fad Fix build for rPackages.units 
(cherry picked from commit 1eb1fec3ae)
 2018-10-08 12:53:43 +02:00
ivanbrennan 989f24befc
git2r: add SSH support 
When building the devtools R module, which depends on git2r, it reports
that libssh2 cannot be found, and falls back to building without SSH
support. Adding libssh2.dev to git2r's native build inputs fixes this.
 2018-09-11 16:39:20 -04:00
Ryan Mulligan 73ae8e53e2 rPackages.RPostgres: fix configure paths and includes 
closes #46208
 2018-09-09 14:37:28 -07:00
Mitsuhiro Nakamura 5e42a081a3 r-jqr: fix build (#45333) 2018-08-20 00:08:28 +02:00
volth e6d3c65442
r-packages: fix regression 2018-08-04 06:19:08 +00:00
Mitsuhiro Nakamura 0a541aa38c rPackages.buildRPackage: fix error if requireX is missing 2018-08-03 01:08:35 +09:00
Mitsuhiro Nakamura 559997179d rPackages: export buildRPackage 2018-08-03 01:08:07 +09:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
Markus Ankenbrand 775fd4bfba rPackages.haven: fix installation 2018-07-12 11:07:27 +02:00
Mitsuhiro Nakamura c072024409 rPackages.reprex: fix build 2018-07-11 23:16:49 +09:00
Markus Ankenbrand 89f44c1314 rPackages.rhdf5: fix installation 
Fix #43285
 2018-07-10 16:38:11 +02:00
Peter Simons 03476783a5 R: fix evaluation errors 2018-07-07 12:10:46 +02:00
Peter Simons 49c649d573 R: update CRAN package set to snapshot 2018-07-06 2018-07-07 12:10:46 +02:00
Peter Simons d984656a2a R: update package set 
The CRAN snapshot is at "2018-07-03". Bioc is now at 3.8.
 2018-07-07 12:10:46 +02:00
Markus Ankenbrand 9eeea0b9ef rPackages.rhdf5: fix installation 
Fix #42878
 2018-07-02 18:51:18 +02:00
Daiderd Jordan 654960c1cd
Merge pull request #42290 from mnacamura/r-igraph-darwin 
rPackages.igraph: fix Darwin build
 2018-06-20 19:52:36 +02:00
Mitsuhiro Nakamura f972a30f16 rPackages.igraph: fix Darwin build 2018-06-20 11:08:29 +09:00
Mitsuhiro Nakamura dada18527a rPackages.RcppEigen: fix Darwin build 2018-06-20 10:59:18 +09:00
Josef Kemetmüller aeda45821d rPackages.mgcv: fix darwin build 
This fixes the error:
    ld: library not found for -liconv
 2018-06-07 00:00:42 +02:00
Josef Kemetmüller 0275562a12 rPackages.Matrix: fix darwin build 
This fixes the error:
    ld: library not found for -liconv
 2018-06-07 00:00:07 +02:00
Josef Kemetmüller d8ad2ad916 rPackages.nlme: fix darwin build 
This fixes the error:
    ld: library not found for -liconv
 2018-06-06 23:59:09 +02:00
Josef Kemetmüller e023f117f8 rPackages.KernSmooth: fix darwin build 
This fixes the error:
    ld: library not found for -liconv
 2018-06-06 23:58:46 +02:00
Josef Kemetmüller 5d092b3052 rPackages.cluster: fix darwin build 
This fixes the error:
    ld: library not found for -liconv
 2018-06-06 23:57:08 +02:00
Mitsuhiro Nakamura 89a5e6db55 rPackages.JuniperKernel: fix non-Darwin build 2018-05-15 17:50:11 +09:00
Mitsuhiro Nakamura d35604d910 rPackages: fix binutils path on Darwin 2018-05-12 20:51:43 +09:00
Peter Simons 94295e3cee R: update CRAN and BIOC package sets 2018-04-24 09:19:38 +02:00
Shea Levy 05e375d710
Merge remote-tracking branch 'origin/master' into staging 2018-03-28 09:36:47 -04:00
Graham Christensen 92d53362d4
Move all nixpkgs doc files in to the doc directory 
This makes a makefile-driven developer workflow nicer.
 2018-03-25 19:52:00 -04:00
Matthew Bauer 9109a90479 treewide: remove some more gettext references 2018-03-22 16:50:14 -05:00
Peter Simons 9c207cd922 R: fix evaluation errors 2018-03-15 21:14:29 +01:00
Peter Simons 52dce0fb38 R: update the CRAN and BIOC package sets 2018-03-15 19:39:55 +01:00
Averell Dalton 028e67abce rPackages.mongolite: fix build 2018-03-10 04:01:49 +01:00
Vladimír Čunát 565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Peter Simons a06b81b8ad
Merge pull request #35651 from mnacamura/r-xml2-darwin 
rPackages.xml2: fix darwin build
 2018-02-26 20:16:16 +01:00
Mitsuhiro Nakamura 4b1627d313 rPackages.xml2: fix darwin build 2018-02-26 10:47:57 +09:00
Mitsuhiro Nakamura 671e3f5c4d rPackages.JuniperKernel: fix darwin build 2018-02-26 10:00:00 +09:00
Alexander V. Nikolaev 0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Justin Bedo 8d03d9b9af
rPackages: add bioconductor archive url 2018-02-21 09:58:17 +11:00
Justin Bedo cfc07bcf0e
bioconductor: 3.4 -> 3.6 2018-02-21 09:58:17 +11:00
Mitsuhiro Nakamura c4658ac0a4 rPackages.pbdZMQ: fix package loading on Darwin 2018-02-10 00:54:28 +09:00