This packags the Intel Math Kernel library on x86-64 platforms, which is a
dependency for many data science and machine learning packages.
Upstream, Intel provides proprietary binary RPMs with a permissive
redistribution license. These have been repackaged in both Debian and Anaconda,
so we are not the first distribution to redistribute.
The original build broke with the following linker issue:
```
CXXLD _PythonMagick.la
/nix/store/h0lbngpv6ln56hjj59i6l77vxq25flbz-binutils-2.30/bin/ld: cannot find -l-L/nix/store/4gh6ynzsd5ndx37hmkl62xa8z30k43y1-imagemagick-6.9.9-34/lib
collect2: error: ld returned 1 exit status
```
This happens since `BOOST_PYTHON_LIB` wasn't set properly, however
`_PythonMagick.la` was linked with `-l$(BOOST_PYTHON_LIB)
$(MAGICK_LIBS)`. With an empty `BOOST_PYTHON_LIB` the linker got
confused.
To work around this, the `boost` library directory needs to be specified
explicitly. To ensure that the changes take effect, the original
`configure` script shipped with `$src` needs to be removed and recreated
using the `autoreconfHook`.
Additionally the `imagemagick` license (https://spdx.org/licenses/ImageMagick.html)
needs to be added to `lib/licenses.nix` to document the proper license
of `pythonmagick` in the meta section.
* The ELK stack is upgraded to 6.3.2.
* `elasticsearch6`, `logstash6` and `kibana6` now come with X-Pack which is
a suite of additional features. These are however licensed under the unfree
"Elastic License".
* Fortunately they also provide OSS versions which are now packaged
under: `elasticsearch6-oss`, `logstash6-oss` and `kibana6-oss`.
Note that the naming of the attributes is consistent with upstream.
* The test `nix-build nixos/tests/elk.nix -A ELK-6` will test the OSS
version by default. You can also run the test on the unfree ELK using:
`NIXPKGS_ALLOW_UNFREE=1 nix-build nixos/tests/elk.nix -A ELK-6 --arg enableUnfree true`
Uses the HTTPS url for cases where the existing URL has a permanent
redirect. For each domain, at least one fixed derivation URL was
downloaded to test the domain is properly serving downloads.
Also fixes jbake source URL, which was broken.
The license of CompCert is not a generic "INRIA" license. It is "INRIA Non-Commercial
Agreement for the CompCert verified compiler". As unfortunate as it may seem, this
is a non-free license (clearly mentioned as such in its preamble). See also #20256.
This does break the API of being able to import any lib file and get
its libs, however I'm not sure people did this.
I made this while exploring being able to swap out docFn with a stub
in #2305, to avoid functor performance problems. I don't know if that
is going to move forward (or if it is a problem or not,) but after
doing all this work figured I'd put it up anyway :)
Two notable advantages to this approach:
1. when a lib inherits another lib's functions, it doesn't
automatically get put in to the scope of lib
2. when a lib implements a new obscure functions, it doesn't
automatically get put in to the scope of lib
Using the test script (later in this commit) I got the following diff
on the API:
+ diff master fixed-lib
11764a11765,11766
> .types.defaultFunctor
> .types.defaultTypeMerge
11774a11777,11778
> .types.isOptionType
> .types.isType
11781a11786
> .types.mkOptionType
11788a11794
> .types.setType
11795a11802
> .types.types
This means that this commit _adds_ to the API, however I can't find a
way to fix these last remaining discrepancies. At least none are
_removed_.
Test script (run with nix-repl in the PATH):
#!/bin/sh
set -eux
repl() {
suff=${1:-}
echo "(import ./lib)$suff" \
| nix-repl 2>&1
}
attrs_to_check() {
repl "${1:-}" \
| tr ';' $'\n' \
| grep "\.\.\." \
| cut -d' ' -f2 \
| sed -e "s/^/${1:-}./" \
| sort
}
summ() {
repl "${1:-}" \
| tr ' ' $'\n' \
| sort \
| uniq
}
deep_summ() {
suff="${1:-}"
depth="${2:-4}"
depth=$((depth - 1))
summ "$suff"
for attr in $(attrs_to_check "$suff" | grep -v "types.types"); do
if [ $depth -eq 0 ]; then
summ "$attr" | sed -e "s/^/$attr./"
else
deep_summ "$attr" "$depth" | sed -e "s/^/$attr./"
fi
done
}
(
cd nixpkgs
#git add .
#git commit -m "Auto-commit, sorry" || true
git checkout fixed-lib
deep_summ > ../fixed-lib
git checkout master
deep_summ > ../master
)
if diff master fixed-lib; then
echo "SHALLOW MATCH!"
fi
(
cd nixpkgs
git checkout fixed-lib
repl .types
)
