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1159 commits

Author SHA1 Message Date
Dan Peebles 7ad3fd7ca7 neuron: fix on clang 3.8 and above 
This is in preparation for upgrading Darwin stdenv to LLVM 4
 2017-03-21 01:00:18 -04:00
Michael Raskin 4d5f33deff Merge pull request #23376 from bcdarwin/ants 
ANTs: init at 2.1.0 (0gyys1lf) and update ITK accordingly
 2017-03-18 18:42:24 +01:00
Robin Gloster f70a896094
hol: mark as broken 2017-03-14 15:36:06 +01:00
Arseniy Seroka 320a8a5a94 Merge pull request #23842 from volhovM/fix/sage_68_sed 
sage: fix build at 6.8
 2017-03-13 16:51:55 +03:00
Robin Gloster e2a13af49c
emboss: fix build 2017-03-13 13:15:51 +01:00
Mikhail Volkhov 78c0cecc5f
sage: fix build at 6.8 2017-03-13 10:34:55 +03:00
Maximilian Bosch 2df3b5ca7f geogebra: 5-0-331-0 -> 5-0-338-0 (#23593) 2017-03-12 21:37:10 +00:00
Jörg Thalheim 4d13b5d201 Merge pull request #23631 from edef1c/verilator-shebang 
verilator: fix Perl shebangs
 2017-03-09 15:05:40 +01:00
Justin Bedo 1ac797861b
SnpEff: init at 4.3i 2017-03-08 22:43:50 +01:00
Justin Bedo 076e513b94
varscan: init at 2.4.2 2017-03-08 22:43:49 +01:00
Justin Bedo 4bb50fd08c
picard-tools: init at 2.7.1 2017-03-08 22:43:45 +01:00
Justin Bedo 7f214e6410
bedtools: init at 2.26.0 2017-03-08 22:36:29 +01:00
Justin Bedo 661048c803
platypus: init at 2017-03-07 2017-03-08 22:36:03 +01:00
Ricardo Ardissone e17d3d4ef1 gplates: use boost 160 
update 161 changed reference parameters for optional
https://hydra.nixos.org/build/49707856/nixlog/1
http://www.boost.org/doc/libs/1_61_0/libs/optional/doc/html/boost_ooptional/relnotes.html
 2017-03-08 13:04:34 +02:00
edef 2c02c84cdc verilator: fix Perl shebangs 2017-03-08 11:38:48 +01:00
Peter Simons c5563b48ba R: set TZDIR properly to fix test suite 2017-03-07 14:56:46 +01:00
Peter Simons 6b3eec627e R: include output of sessionInfo() in the "make check" log 
The R developers would like that information to be included in bug
reports.
 2017-03-07 14:56:46 +01:00
Peter Simons fac139e723 R: update to version 3.3.3 2017-03-07 14:56:46 +01:00
Jörg Thalheim 99e74e9509
alliance: mark as broken 
there is no maintainer for this package and even debian looks
for a new maintainer.
 2017-03-06 08:27:10 +01:00
Thomas Tuegel 494dc2af2e Merge pull request #23423 from ttuegel/fricas 
fricas: 1.2.2 -> 1.3.1
 2017-03-03 09:49:47 -06:00
Robin Gloster bb9a37a2a5
ikarus: remove 
unmaintained, only works on 32 bit
 2017-03-03 13:43:04 +01:00
Benno Fünfstück 253d736398 boinc: fix location of /etc in $out 
Looks like the latest version no longer requires the patch, and the patch instead resulted in
/etc files being installed to `$out/$out/etc` instead of `$out/etc`
 2017-03-03 12:58:43 +01:00
Thomas Tuegel 28cb067600
fricas: 1.2.2 -> 1.3.1 2017-03-02 19:39:55 -06:00
Robin Gloster c1866cade9
libsForQt5.qmltermwidget: fix build 2017-03-02 14:13:35 +01:00
Ben Darwin 05359c327b ANTs: init at 2.1.0 (0gyys1lf) 2017-03-01 21:06:30 -05:00
Katona László 085502dd80 cytoscape: fixed issue with startup script 2017-03-01 21:46:49 +01:00
Robin Gloster 4df663a9a2
verilator: 3.884 -> 3.900 2017-02-27 15:22:50 +01:00
Domen Kožar 4ccb553b70 Merge pull request #22817 from jbedo/r 
R: 3.2.4 -> 3.3.2
 2017-02-27 14:02:13 +01:00
Bjørn Forsman c49533a494 qt-gstreamer1: align attrname with pkgname 2017-02-27 12:16:26 +01:00
Christopher League 242f6caac6 logisim: use better jar wrapper, closes #23068 2017-02-26 10:19:32 +01:00
Gabriel Ebner cc647804f1 lean: 3.0.0 -> 3.1.0 2017-02-26 08:50:15 +01:00
Thomas Tuegel 0ed156a216 Merge pull request #22977 from ttuegel/triage-kde4 
Remove KDE 4 desktop packages
 2017-02-25 12:21:44 -06:00
Peter Hoeg e564a399d9 Merge pull request #22770 from NickHu/master 
fdr: init at 4.2.0
 2017-02-25 14:50:04 +08:00
Thomas Tuegel b4ba042924
qt4: Don't pass top-level attribute through kde4 2017-02-24 16:49:06 -06:00
Nick Hu cbe765043f fdr: init at 4.2.0 2017-02-24 11:00:02 +00:00
Justin Bedo 4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Franz Pletz 67018e7759
pymol: fix evaluation 
cc #23007 @Mounium @Mic92
 2017-02-22 08:48:42 +01:00
Mounium eb688ac0a7 pymol: init at 1.8.4 (#23007) 2017-02-22 01:35:09 +01:00
Maximilian Bosch 10a453c61b
geogebra: add ma27 as maintainer 2017-02-19 16:51:01 +01:00
Maximilian Bosch 5d62724e27
geogebra: 5-0-328-0 -> 5-0-331-0 2017-02-19 16:44:49 +01:00
Maximilian Bosch d95868e980
geogebra: 5-0-320-0 -> 5-0-328-0 2017-02-14 17:43:58 +01:00
Rongcui Dong acce1d9ad2 ngspice: Add XSpice and Cider support 2017-02-13 15:23:38 -08:00
Frederik Rietdijk 2832472da0 golly: use python2 2017-02-10 09:35:10 +01:00
Celine Mercier 78c052e91a
ecopcr: init at 0.8.0 2017-02-06 16:01:08 +01:00
Ian Lancaster 5f67b7b30a emboss: 6.0.1 -> 6.6.0 2017-02-04 19:05:48 -05:00
Joachim F 2b961075ae Merge pull request #22231 from Ma27/hotfix/update-geogebra 
geogebra: 5.0.271.0 -> 5-0-320-0
 2017-02-03 01:13:07 +01:00
Gabriel Ebner 311ec6abd5 Merge pull request #22361 from peterhoeg/u/crunch 
speedcrunch: 0.11 -> 0.12.0
 2017-02-02 07:54:06 +01:00
Rongcui Dong 7ea20c9e27 ngspice: 25 -> 26 2017-02-02 07:42:26 +01:00
Peter Hoeg 58a5d0783e speedcrunch: 0.11 -> 0.12.0 
Also:
  - build against qt5 instead of qt4
 2017-02-02 09:13:54 +08:00
Gabriel Ebner ac10c19746 veriT: 201506 -> 2016 2017-02-01 19:43:02 +01:00