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3795 commits

Author SHA1 Message Date
Doron Behar 967a01f206
Merge pull request #100065 from matthuszagh/kicad 2020-10-10 12:28:09 +03:00
Daniel Schaefer 384470e23f
Merge pull request #99964 from guserav/horizon-eda 
horizon-eda: init at 1.2.1
 2020-10-10 11:49:07 +08:00
guserav 6a4c1972a2 horizon-eda: init at 1.2.1 
Mostly based on #86694 by yrashk
 2020-10-09 19:57:38 +02:00
Matt Huszagh 104aca941a kicad-unstable: 2020-08-22 -> 2020-10-09 
base.nix requires gtk3 to compile
 2020-10-09 07:36:42 -07:00
Matt Huszagh b67afd8a44 kicad: modify update script to use gitlab for libraries 
Kicad libraries are now hosted on gitlab instead of github.
 2020-10-09 07:36:41 -07:00
Dmitry Kalinkin b0486f3171
pythia: 8.244 -> 8.303 2020-10-07 20:28:19 -04:00
Ben Darwin e673c285e1 conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin 44f2bf87d6 EZminc: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin 83d0571ae6 mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
Ben Darwin 9a190786a4 n3: 2017-09-18 -> 2018-08-09 
- update LIBMINC_DIR and EBTKS_DIR due to CMake updates in those packages
 2020-10-06 15:31:16 -04:00
Ben Darwin 7772e248ab inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
Ben Darwin 91a429a148 minc_tools: unstable-2019-12-04 -> unstable-2020-07-25 2020-10-06 15:31:14 -04:00
evils b8a03a66b3
fahclient: 7.6.9 -> 7.6.13 (#99595) 2020-10-05 14:40:10 +02:00
Gabriel Ebner 9fadca2bcc qalculate-gtk: 3.12.1 -> 3.13.0 2020-10-04 14:53:10 +02:00
Mario Rodas c89c819abd
Merge pull request #98672 from r-ryantm/auto-update/bcftools 
bcftools: 1.10.2 -> 1.11
 2020-10-02 23:57:06 -05:00
Ryan Mulligan 6aadae67de
Merge pull request #81550 from scalavision/add-kent-utils-to-bioinf 
kent: init at 394
 2020-10-02 09:05:51 -07:00
Patrick Hilhorst f7e390e6d4 treewide: fix redirected urls (run 3) 
Related:
 - 9fc5e7e473
 - 593e11fd94
 - 508ae42a0f

Since the last time I ran this script, the Repology API changed, so I had to
adapt the script used in the previous PR. The new API should be more robust, so
overall this is a positive (no more grepping the error messages for our relevant
data but just a nice json structure).

Here's the new script I used:

```sh
curl https://repology.org/api/v1/repository/nix_unstable/problems \
   | jq -r '.[] | select(.type == "homepage_permanent_https_redirect") | .data | "s@\(.url)@\(.target)@"' \
   | sort | uniq | tee script.sed
find -name '*.nix' | xargs -P4 -- sed -f script.sed -i
```

I will also add this script to `maintainers/scripts`.
 2020-10-02 09:01:35 -07:00
Scalavision a6f124f57b kent: init at 404 2020-10-01 19:50:37 +02:00
Anderson Torres 5e99485b3d
Merge pull request #99214 from bcdarwin/update-mrtrix 
mrtrix: 3.0.0 -> 3.0.2
 2020-10-01 01:14:54 -03:00
Ben Darwin a94d0fe675 mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
Vincent Laporte cc739e1c67 ocamlPackages.z3: init at 4.8.9 2020-09-30 22:03:17 +02:00
Dmitry Kalinkin dd57dcf2a5
stellarium: enable on darwin 2020-09-27 17:00:10 -04:00
Maximilian Bosch b8d1e39a28
stellarium: 0.20.2 -> 0.20.3 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.3
 2020-09-27 22:09:36 +02:00
Matt Huszagh 6b9481607b openems: init at unstable-2020-02-15 2020-09-27 11:32:27 -07:00
Robert Scott 8db3ea1ef1
Merge pull request #98614 from r-burns/aragorn 
aragorn: fix build on darwin
 2020-09-25 19:58:10 +01:00
Dmitry Kalinkin 7867aafa51
Merge pull request #97613 from drewrisinger/zhf/verilog 
verilog: cleanup & test
 2020-09-25 10:37:34 -04:00
R. RyanTM e66a7e2fb7 cytoscape: 3.8.0 -> 3.8.1 2020-09-25 04:38:49 +00:00
R. RyanTM f4d3204486 bcftools: 1.10.2 -> 1.11 2020-09-24 18:53:07 +00:00
R. RyanTM 0765b507f9 jmol: 14.31.2 -> 14.31.3 2020-09-23 23:36:41 -07:00
Ryan Burns 6cc2d3e6f2 aragorn: fix build on darwin 
Use environment-specified $CC for C compiler
 2020-09-23 20:45:21 -07:00
Ryan Mulligan dfd2eeabd6
Merge pull request #69644 from bzizou/obitools 
obitools3: init at 3.0.0-beta14
 2020-09-23 19:04:11 -07:00
Doron Behar 0307d0e82b
Merge pull request #98441 from vbgl/why3-1.3.3 
why3: 1.3.1 -> 1.3.3
 2020-09-23 10:35:57 +03:00
Daniël de Kok af5b1a9f94
Merge pull request #98427 from jbedo/octopus 
octopus-caller: 0.6.3 -> 0.7.0
 2020-09-23 08:24:10 +02:00
Jon c7fdc43709
Merge pull request #98283 from risicle/ris-truvari-2.0.2 
truvari: 1.3.4 -> 2.0.2, add new dependencies & fix build
 2020-09-22 23:10:58 -07:00
Robert Scott fc709e6dfe cvc3: enable for darwin 
it may be possible to get it building under clang with some work, but
switching it to gcc for now allows us to enable it
 2020-09-22 23:06:45 -07:00
Robert Scott 53a8a415ac cvc3: fix build against bison 3.7 
for some reason bison 3.7 output references $x_defs.h files under the name
$x.hpp. create symlinks to make this work.
 2020-09-22 23:06:45 -07:00
Austin Seipp daaa0e3350
Merge pull request #98239 from Sohalt/avy 
avy: 2017.10.16 -> cav19
 2020-09-22 23:19:05 -05:00
Vincent Laporte 64b68b30e9
why3: 1.3.1 -> 1.3.3 2020-09-23 03:24:02 +02:00
Drew Risinger ba886f7b1a verilog: add tests 
Run recommended self-tests from iverilog's CI.

Tests add about a minute to the build time on local machine
(2 -> 3 mins).
 2020-09-22 13:58:15 -04:00
Drew Risinger 0d9a6e2da5 verilog: cleanup 
Meta attributes were out of date or not in current style,
and some attributes of derivation were redundant.
 2020-09-22 13:58:06 -04:00
Justin Bedo 4bbdb75f22
octopus-caller: 0.6.3 -> 0.7.0 2020-09-22 08:43:04 +10:00
sohalt 40722346b8 avy: 2017.10.16 -> 2019.05.01 2020-09-20 16:13:29 +02:00
Robert Scott ecd5886830 truvari: 1.3.4 -> 2.0.2, fixing build 
seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module
 2020-09-20 12:25:17 +01:00
Robert Scott f1d2491057 bwa: include static library and some key headers in output 2020-09-20 12:23:18 +01:00
Gabriel Ebner efa2089077
Merge pull request #89731 from doronbehar/jdk_rename 2020-09-20 11:07:55 +02:00
Robert Scott 4637721bc1 truvari: fix build 
be less strict about versions
 2020-09-19 20:25:08 -07:00
Gabriel Ebner 67ff41201f leo3: fix executable 2020-09-19 15:05:02 +02:00
Gabriel Ebner 1c576d0b37 sage: use jdk8 2020-09-19 14:22:43 +02:00
Hannes Weisbach 9c73e34d18 kicad: remove gettext from buildInputs, add to nativeBuildInputs 
The i18n "library" does not link against gettext. It only requires the
msgfmt utility from gettext, hence gettext should be a nativeBuildInput
 2020-09-17 19:48:50 +02:00
Vladyslav M 9147432d5f
Merge pull request #98062 from jonringer/fix-streamlit 
streamlit: fix build
 2020-09-16 23:45:32 +03:00