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5636 commits

Author SHA1 Message Date
Scriptkiddi 4e60a4823b febio-studio: init at 1.6.1 2022-02-21 16:43:36 +01:00
Mario Rodas 947c98310c
Merge pull request #160545 from collares/lean-3.39.2 
lean: 3.39.1 -> 3.39.2
 2022-02-18 06:26:51 -05:00
R. Ryantm b715fcd9d9 cwltool: 3.1.20220210171524 -> 3.1.20220217190813 2022-02-18 00:36:37 -05:00
Mauricio Collares 0c36a9cc35 lean: 3.39.1 -> 3.39.2 2022-02-17 23:42:05 -03:00
R. RyanTM 94f61e4c82
SPAdes: 3.15.3 -> 3.15.4 
(#158938)
 2022-02-18 00:55:34 +01:00
R. RyanTM ac1c96ecec
colmap: 3.6 -> 3.7 
* colmap: 3.6 -> 3.7 (#159198)

* colmap: license is BSD-3-Clause

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-02-18 00:29:14 +01:00
Ben Wolsieffer 1382f006a9
qgroundcontrol: 4.1.4 -> 4.2.0 
* qgroundcontrol: 4.1.4 -> 4.2.0 (#159291)

QGroundControl now tries to download a prebuilt x86_64 .deb package for
the Airmap SDK, so we have to disable this feature. Previously, it was
disabled by default. I guess they were trying to make things easier for
users, but it seems pretty half-baked.

* qgroundcontrol: update homepage

The domain seems to have changed from .org to .com.
 2022-02-18 00:09:39 +01:00
Daniel Wheeler 4befe7a89f
snakemake: 6.10.0 -> 6.15.5 (#159026) 
Fetch from GitHub rather than PyPI so tests are included.
 2022-02-17 18:06:23 -05:00
ajs124 80160499bc
Merge pull request #160340 from helsinki-systems/tetgen 
tetgen: also install library and headers
 2022-02-17 01:57:18 +01:00
Scriptkiddi c8fb08b1e4 tetgen: also install library and headers 2022-02-17 01:37:28 +01:00
Artturi 83dc7a2714
Merge pull request #159808 from r-ryantm/auto-update/tlaplus 2022-02-16 15:53:15 +02:00
Mauricio Collares b38b641ff3 sageWithDoc: fix Sphinx warnings which break docgen 2022-02-15 22:37:34 -03:00
Ben Siraphob 521cfab34b
Merge pull request #157626 from siraben/formula-init 2022-02-15 18:38:41 -06:00
Sandro 5c5a8df724
Merge pull request #156420 from azuwis/transfig 2022-02-16 00:49:28 +01:00
7c6f434c 16fe911917
Merge pull request #160088 from r-ryantm/auto-update/jmol 
jmol: 14.32.6 -> 14.32.21
 2022-02-15 21:39:00 +00:00
Kevin Cox 4e883afc5a
Merge pull request #159226 from lorenzleutgeb/gradle 
gradle: 7.3.3 -> 7.4
 2022-02-15 15:26:18 -05:00
Ben Siraphob 7f94906083
formula: init at 2.0 2022-02-15 14:09:16 -06:00
Lorenz Leutgeb f7e01145af gradle: Update hashes of dependents for 7.4 2022-02-15 09:17:56 +01:00
Zhong Jianxin 507b23f0d1 chemtool: Set platforms to linux 2022-02-15 10:49:51 +08:00
R. Ryantm 099fefbceb jmol: 14.32.6 -> 14.32.21 2022-02-15 02:42:04 +00:00
Zhong Jianxin e8f3914985 treewide: Replace transfig with fig2dev 
Reasons:

- transfig never get upstream update since it was added to nixpkgs 2006,
  according to [fig2dev Debian changelog][1], upstream maintainership
  was taken over at 2016, and renamed to fig2dev.

- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
  transfig.

- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.

- One less package to maintain.

[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
 2022-02-15 10:13:56 +08:00
7c6f434c a6a1e14e52
Merge pull request #159741 from r-ryantm/auto-update/polymake 
polymake: 4.5 -> 4.6
 2022-02-14 20:52:03 +00:00
7c6f434c 117fdae4b6
Merge pull request #159351 from collares/sage-ipython-8 
sage: don't test for Cython source code in tracebacks (temporarily)
 2022-02-14 17:18:21 +00:00
Bobby Rong 8617a5a336
Merge pull request #159645 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.2.4 -> 3.2.5
 2022-02-14 19:58:50 +08:00
R. Ryantm 240262f564 messer-slim: 3.7 -> 3.7.1 2022-02-14 00:46:29 +00:00
markuskowa e7a2652f31
Merge pull request #159311 from r-ryantm/auto-update/gmsh 
gmsh: 4.9.2 -> 4.9.4
 2022-02-13 11:48:17 +01:00
R. Ryantm 42d5cbb78e tlaplus: 1.7.1 -> 1.7.2 2022-02-13 10:33:51 +00:00
R. Ryantm 2220d35562 bada-bib: 0.3.0 -> 0.4.1 2022-02-12 22:22:46 -08:00
R. Ryantm 24b505484b cytoscape: 3.9.0 -> 3.9.1 2022-02-12 21:13:11 -08:00
R. Ryantm ac4ec1ef75 gretl: 2021d -> 2022a 2022-02-12 21:08:09 -08:00
R. Ryantm 154d72f526 ginac: 1.8.1 -> 1.8.2 2022-02-12 20:56:29 -08:00
R. Ryantm 36800803c5 gama: 2.16 -> 2.17 2022-02-12 20:54:56 -08:00
R. Ryantm 0948b62a1f polymake: 4.5 -> 4.6 2022-02-13 04:50:20 +00:00
R. Ryantm aa982c28cf kstars: 3.5.6 -> 3.5.7 2022-02-12 20:32:52 -08:00
Justin Bedő 2759d6f8d8
Merge pull request #159675 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.9 -> 2.26.10
 2022-02-13 09:53:20 +11:00
Justin Bedő 7ff9c00c4b
Merge pull request #159562 from r-ryantm/auto-update/mosdepth 
mosdepth: 0.3.2 -> 0.3.3
 2022-02-13 09:27:54 +11:00
Justin Bedő 28f5937aeb
Merge pull request #159411 from r-ryantm/auto-update/last 
last: 1256 -> 1260
 2022-02-13 09:25:49 +11:00
R. Ryantm 8a4946df2d picard-tools: 2.26.9 -> 2.26.10 2022-02-12 22:20:29 +00:00
R. Ryantm 80175b54cc openhantek6022: 3.2.4 -> 3.2.5 2022-02-12 20:37:00 +00:00
Robert Scott 83ea8999d4 gmsh: enable tests 2022-02-12 16:15:57 +00:00
Robert Scott 61dc066799 gmsh: enable for darwin 2022-02-12 16:13:53 +00:00
R. Ryantm 8bb7bc766f mosdepth: 0.3.2 -> 0.3.3 2022-02-12 14:31:47 +00:00
Mario Rodas 0ff383436d
Merge pull request #159009 from r-ryantm/auto-update/bcal 
bcal: 2.3 -> 2.4
 2022-02-12 08:39:47 -05:00
7c6f434c bff729efd3
Merge pull request #158992 from collares/R-stackprotector 
R: disable stack protector on aarch64-darwin
 2022-02-12 11:32:56 +00:00
Kim Lindberger c7df3bf58c
Merge pull request #155108 from fedeinthemix/add-xyce-2 
Add Xyce 7.4 (second attempt)
 2022-02-12 11:34:10 +01:00
Federico Beffa 10b7f30936 xyce,xyce-parallel: init at 7.4 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com> and
                Kim Lindberger <kim.lindberger@gmail.com>
 2022-02-12 10:26:05 +01:00
R. Ryantm 6ca5bb6e20 last: 1256 -> 1260 2022-02-12 02:52:18 +00:00
Mauricio Collares c763432549 sage: don't test for Cython source code in tracebacks (temporarily) 2022-02-11 19:13:34 -03:00
R. Ryantm 772c6b674c gmsh: 4.9.2 -> 4.9.4 2022-02-11 18:31:28 +00:00
R. Ryantm 1631ffae8d cwltool: 3.1.20220204090313 -> 3.1.20220210171524 2022-02-11 12:44:06 -05:00