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381 commits

Author SHA1 Message Date
R. Ryantm 1631ffae8d cwltool: 3.1.20220204090313 -> 3.1.20220210171524 2022-02-11 12:44:06 -05:00
R. RyanTM 1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 (#158272) 2022-02-05 15:14:21 -05:00
Sandro 63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts 2022-02-04 18:26:20 +01:00
R. Ryantm af3af2df32 cwltool: 3.1.20220124184855 -> 3.1.20220202173120 2022-02-03 20:06:12 -05:00
markuskowa 65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib 
bada-bib: init at 0.3.0
 2022-02-01 22:26:26 +01:00
Robert Schütz a13fe11c59 sasview: 4.2.0 -> 5.0.4 2022-01-30 20:47:10 +00:00
Andrew Fontaine 3c0680b783
fahviewer: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:47:24 -05:00
Andrew Fontaine ba785adb28
fahcontrol: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:46:52 -05:00
Yipeng Sun 54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD (#157069) 2022-01-27 19:37:36 -05:00
Sandro 27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker 2022-01-27 14:06:36 +01:00
ajs124 3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip 
tulip: 5.2.1 -> 5.6.1
 2022-01-26 23:33:44 +01:00
Felix Buehler ed7bf9452c treewide: remove *.upstream files from updateWalker 2022-01-26 21:46:07 +01:00
R. Ryantm 6b3bf39220 cwltool: 3.1.20220119140128 -> 3.1.20220124184855 2022-01-25 21:56:09 -05:00
R. Ryantm f888e66ad4 cwltool: 3.1.20211107152837 -> 3.1.20220119140128 2022-01-21 09:09:34 -05:00
ajs124 479ca09609 tulip: 5.2.1 -> 5.6.1 2022-01-21 03:45:21 +01:00
Robert Schütz d5cceedbd1 python,pythonPackages: make aliases 
Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
 2022-01-16 18:39:59 +00:00
Bobby Rong cb3da55ede
Merge pull request #154988 from veprbl/pr/broken_gplates 
gplates: mark as broken on darwin
 2022-01-15 13:24:14 +08:00
Bobby Rong a6ed245599
Merge pull request #154989 from veprbl/pr/broken_graphia 
graphia: mark as broken on darwin
 2022-01-15 13:23:31 +08:00
Fabian Affolter 49574fc9d5
Merge pull request #154934 from fabaff/fix-toil 
toil: 5.4.0 -> 5.6.0
 2022-01-14 21:16:45 +01:00
Dmitry Kalinkin 2b9f8eb0a2
graphia: mark as broken on darwin 2022-01-14 03:38:54 -05:00
Dmitry Kalinkin 69d78f174a
gplates: mark as broken on darwin 2022-01-14 03:33:15 -05:00
Shamrock Lee cc5ffb3de4 root: Explicit specify -Dtmva=ON 2022-01-14 14:19:33 +08:00
Shamrock Lee 336cc50b1f root: add openblas and lapack into buildInputs for TMVA 2022-01-14 14:15:22 +08:00
Fabian Affolter 32003c3051 toil: 5.4.0 -> 5.6.0 2022-01-13 21:37:08 +01:00
Fabian Affolter 1a549598b4 cwltool: 3.1.20211104071347 -> 3.1.20211107152837 2022-01-12 18:00:43 +01:00
Fabian Affolter b9c6bff4f0 nextinspace: 1.0.6 -> 2.0.3 2022-01-09 01:17:23 +01:00
Ben Siraphob 39a0a70d29
treewide: fix homepages with permanent redirect to https 2021-12-29 22:06:47 +07:00
Rasmus Thomsen 83e5da9238
bada-bib: init at 0.3.0 2021-12-28 12:40:39 +01:00
Dmitry Kalinkin d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex 2021-12-26 00:07:49 -05:00
Bobby Rong bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc 
boinc: 7.14.2 -> 7.18.1
 2021-12-18 21:32:22 +08:00
Oleksii Filonenko a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink 
rink: 0.6.1 -> 0.6.2
 2021-12-13 14:40:57 +02:00
R. Ryantm 3112fe2ace openmvg: 1.6 -> 2.0 2021-12-07 20:17:43 +00:00
R. Ryantm 5517f74759 rink: 0.6.1 -> 0.6.2 2021-12-06 23:57:17 +00:00
Luflosi ca87168c6e
boinc: copy systemd service file to output 2021-12-06 23:56:06 +01:00
Luflosi 4e0d9003fc
boinc: 7.14.2 -> 7.18.1 2021-12-06 23:56:06 +01:00
Luflosi a7be4f3840
boinc: add Luflosi as maintainer 2021-12-06 23:56:05 +01:00
Michael Raskin 65b2df8b45 golly: 3.3 -> 4.1 2021-12-06 16:27:09 +01:00
Bernardo Meurer 51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Dmitry Kalinkin a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
Felix Buehler b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Fabian Affolter 18b531b514 cwltool: 3.1.20210628163208 -> 3.1.20211104071347 2021-11-06 13:01:16 +01:00
R. Ryantm 5ba5ff1a84 cytoscape: 3.8.2 -> 3.9.0 2021-10-29 09:08:26 +00:00
Dmitry Kalinkin 49d19b7945
snakemake: 6.7.0 -> 6.10.0 2021-10-24 17:49:14 -04:00
Vladimir Korolev 72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Robert Schütz 98c8fc6fd0 gplates: 2.2.0 -> 2.3.0 2021-09-26 23:11:29 -07:00
Dmitry Kalinkin 84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04 
root: 6.24.02 -> 6.24.06
 2021-09-15 11:35:07 -04:00
Dmitry Kalinkin 0ec2acf51f
root: build with -Dimt=ON 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin 95b2d74bc5
root: re-enable unvendored LLVM 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin aedfb59c87
root: 6.24.02 -> 6.24.06 2021-09-03 12:41:04 -04:00
Dmitry Kalinkin 0a312a356c
root5: fix for gcc10 2021-09-01 07:14:56 -04:00