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Author SHA1 Message Date
7c6f434c d5db292192
Merge pull request #151424 from collares/sage-matplotlib 
[staging-next] sage: import matplotlib and sphinx update patches
 2021-12-21 12:55:50 +00:00
Felix Buehler f4931dfaee ekrhyper: refactor 2021-12-21 12:44:01 +01:00
Dmitry Kalinkin ac40a963c9
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/applications/editors/vim/common.nix
	pkgs/development/python-modules/jellyfin-apiclient-python/default.nix
	pkgs/development/python-modules/pymavlink/default.nix
 2021-12-20 12:09:28 -05:00
Mauricio Collares 3eaca311d4 sage: import matplotlib and sphinx update patches 2021-12-20 10:09:35 -03:00
Doron Behar e6647de754
Merge pull request #151281 from r-ryantm/auto-update/qalculate-gtk 2021-12-19 22:40:43 +02:00
Dmitry Kalinkin bbea48728b
Merge pull request #151151 from veprbl/pr/libcxx_no_apple_availability 
llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE
 2021-12-19 11:42:28 -05:00
Gabriel Ebner a3bbbe08bd
Merge pull request #151328 from Kha/elan-lean-cc 
elan: set LEAN_CC to stdenv cc
 2021-12-19 17:39:28 +01:00
Sebastian Ullrich b20024dd3a elan: set LEAN_CC to stdenv cc 
This ensures that `leanc` understands cc-wrapper vars such as `NIX_LDFLAGS`
 2021-12-19 17:27:10 +01:00
Bobby Rong 856672f2ce
Merge pull request #151249 from lopsided98/mavproxy-update 
mavproxy: 1.8.45 -> 1.8.46
 2021-12-19 22:21:30 +08:00
R. Ryantm 57ff8c2e36 qalculate-gtk: 3.21.0 -> 3.22.0 2021-12-19 07:38:29 +00:00
github-actions[bot] 2e447628d8
Merge master into staging-next 2021-12-19 06:01:16 +00:00
qbg 24111d6a7a
mathematica: 12.3.1 -> 13.0.0 (#151213) 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2021-12-18 23:24:27 -05:00
R. Ryantm d14a6ef13e mavproxy: 1.8.45 -> 1.8.46 2021-12-18 20:04:55 -05:00
Dmitry Kalinkin da8f155b2a
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/sphinxext-opengraph/default.nix
 2021-12-18 10:18:14 -05:00
Dmitry Kalinkin e1aaaa90fe
llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE 2021-12-18 10:09:25 -05:00
Bobby Rong bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc 
boinc: 7.14.2 -> 7.18.1
 2021-12-18 21:32:22 +08:00
github-actions[bot] 2749f6983a
Merge master into staging-next 2021-12-17 06:01:26 +00:00
Dmitry Kalinkin 50a4c52747
Merge pull request #147648 from veprbl/pr/mxnet_1_8_0 
mxnet: 1.6.0 -> 1.8.0, enable on darwin
 2021-12-16 22:37:03 -05:00
mucaho 1509f463a0 clingcon: 3.3.0 -> 5.0.0 2021-12-16 20:28:19 +01:00
github-actions[bot] 9c7ec75d6b
Merge master into staging-next 2021-12-16 06:01:09 +00:00
Silvan Mosberger e30a4fa4bd
Merge pull request #149404 from Infinisil/remove-scyther 2021-12-16 01:56:39 +01:00
Dmitry Kalinkin a7a3675563
gromacs: fix build on darwin 2021-12-15 15:22:10 -05:00
sternenseemann d860ba7f09 Merge remote-tracking branch 'origin/master' into staging-next 2021-12-15 11:30:31 +01:00
Justin Bedő f6e14b6ada
Merge pull request #150628 from jbedo/subread 
subread: init 2.0.3
 2021-12-15 13:46:45 +11:00
github-actions[bot] 0242879f3f
Merge master into staging-next 2021-12-14 12:01:17 +00:00
Bobby Rong e5a6bba62b
Merge pull request #150447 from r-ryantm/auto-update/seaview 
seaview: 5.0.4 -> 5.0.5
 2021-12-14 18:38:55 +08:00
7c6f434c b862304c67
Merge pull request #150597 from collares/sage-arb 
arb: 2.20.0 -> 2.21.1
 2021-12-14 08:56:42 +00:00
Justin Bedo 6a1f4a51eb
subread: init 2.0.3 2021-12-14 13:30:23 +11:00
github-actions[bot] 784572e7cf
Merge master into staging-next 2021-12-13 18:01:18 +00:00
Mauricio Collares 9b35049770 sage: import arb 2.21.0 test fixes 2021-12-13 11:16:33 -03:00
Dmitry Kalinkin 8f0a587d4a
z3: fix darwin build 2021-12-13 07:42:47 -05:00
Oleksii Filonenko a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink 
rink: 0.6.1 -> 0.6.2
 2021-12-13 14:40:57 +02:00
Martin Weinelt 423119b70b
Merge branch 'master' into staging-next 2021-12-13 12:20:07 +01:00
Felix Buehler 4cc23f2b1e why3.withProvers: add dontUnpack 2021-12-12 20:33:14 +01:00
R. Ryantm d4a5bdc264 seaview: 5.0.4 -> 5.0.5 2021-12-12 15:59:16 +00:00
Dmitry Kalinkin 1dcb22acc9
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/gdown/default.nix
 2021-12-12 00:00:04 -05:00
Mario Rodas e09a539ccb
Merge pull request #150166 from r-ryantm/auto-update/gmsh 
gmsh: 4.8.4 -> 4.9.0
 2021-12-11 22:52:19 -05:00
Ryan Mulligan 9e570d0034
Merge pull request #150031 from r-ryantm/auto-update/jmol 
jmol: 14.31.49 -> 14.32.2
 2021-12-11 16:23:05 -08:00
Dmitry Kalinkin b6b59334bb
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/celery/default.nix
	pkgs/development/python-modules/kombu/default.nix
 2021-12-11 13:15:49 -05:00
Jörg Thalheim 453b06c677
Merge pull request #150121 from markuskowa/fix-cp2k 
cp2k: make elpa optional
 2021-12-11 14:04:41 +00:00
Jörg Thalheim 4e5d03cd21
Merge pull request #150111 from r-ryantm/auto-update/gretl 
gretl: 2021b -> 2021d
 2021-12-11 13:34:40 +00:00
Jörg Thalheim 953bdd43bf
Merge pull request #150124 from r-ryantm/auto-update/gwyddion 
gwyddion: 2.59 -> 2.60
 2021-12-11 13:31:59 +00:00
Jörg Thalheim 2a322411ff
Merge pull request #150217 from r-ryantm/auto-update/cryptoverif 
cryptoverif: 2.04 -> 2.05
 2021-12-11 12:53:42 +00:00
R. Ryantm 50554a43cf cryptoverif: 2.04 -> 2.05 2021-12-11 10:05:51 +00:00
R. Ryantm 2d939d3262 gmsh: 4.8.4 -> 4.9.0 2021-12-11 01:08:58 +00:00
R. Ryantm baf80d066b gama: 2.14 -> 2.16 2021-12-10 22:15:01 +00:00
R. Ryantm 7bbf6a048b gwyddion: 2.59 -> 2.60 2021-12-10 20:19:55 +00:00
Markus Kowalewski 6d1f54dc5d
cp2k: make elpa optional 2021-12-10 20:56:21 +01:00
R. Ryantm 7abc2f38b4 gretl: 2021b -> 2021d 2021-12-10 19:06:52 +00:00
github-actions[bot] cc51bd619c
Merge master into staging-next 2021-12-10 18:01:06 +00:00
Ryan Mulligan 76d64cf517
Merge pull request #149908 from r-ryantm/auto-update/marvin 
marvin: 21.9.0 -> 21.18.0
 2021-12-10 06:36:30 -08:00
R. Ryantm a1fa86e691 jmol: 14.31.49 -> 14.32.2 2021-12-10 10:13:57 +00:00
github-actions[bot] b2a2a5759e
Merge master into staging-next 2021-12-10 06:01:17 +00:00
Maximilian Bosch c87f93843c
Merge pull request #148905 from r-ryantm/auto-update/calc 
calc: 2.13.0.1 -> 2.14.0.8
 2021-12-10 01:22:16 +01:00
github-actions[bot] 92aabc6576
Merge master into staging-next 2021-12-10 00:01:53 +00:00
7c6f434c 26b52ea6a6
Merge pull request #149596 from r-ryantm/auto-update/polymake 
polymake: 4.4 -> 4.5
 2021-12-09 22:48:21 +00:00
R. Ryantm 806d3e25cd marvin: 21.9.0 -> 21.18.0 2021-12-09 19:20:04 +00:00
github-actions[bot] 379c22dbb3
Merge master into staging-next 2021-12-09 18:01:06 +00:00
Vincent Laporte a2dc97cd5c proverif: 2.03 → 2.04 2021-12-09 17:45:15 +01:00
Vincent Laporte a160defe64 coq_8_15: init at 8.15+rc1 2021-12-09 15:46:06 +01:00
Alyssa Ross c9a581b05f
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
CONFLICT (rename/add): Rename pkgs/development/python-modules/jsonwatch/default.nix->pkgs/tools/misc/jsonwatch/default.nix in nixpkgs/master.  Added pkgs/tools/misc/jsonwatch/default.nix in HEAD
 2021-12-09 01:43:58 +00:00
Jörg Thalheim 2808a3bc74
Merge pull request #149465 from r-ryantm/auto-update/openmvg 
openmvg: 1.6 -> 2.0
 2021-12-08 15:15:48 +00:00
R. Ryantm 5a5f052be8 polymake: 4.4 -> 4.5 2021-12-08 10:49:07 +00:00
Alyssa Ross 16fb150e03
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	pkgs/development/libraries/libunwind/default.nix
 2021-12-07 23:56:16 +00:00
R. Ryantm 3112fe2ace openmvg: 1.6 -> 2.0 2021-12-07 20:17:43 +00:00
Silvan Mosberger 55af3549a3 scyther: remove since it only supports Python 2 
See https://github.com/cascremers/scyther/issues/20
 2021-12-07 17:58:03 +01:00
R. Ryantm d337b164d6 minimap2: 2.22 -> 2.23 2021-12-07 15:04:36 +00:00
R. Ryantm 817561795f logisim-evolution: 3.7.1 -> 3.7.2 2021-12-07 12:21:37 +00:00
Jonathan Ringer 9dd8bffe92
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/aiocron/default.nix
 2021-12-07 00:11:07 -08:00
Artturi 84bd0d6b7b
Merge pull request #147023 from wackbyte/fix-groove 
groove: 5.7.4 -> 5.8.1 and jre -> jre8
 2021-12-07 05:12:15 +02:00
R. Ryantm 5517f74759 rink: 0.6.1 -> 0.6.2 2021-12-06 23:57:17 +00:00
Luflosi ca87168c6e
boinc: copy systemd service file to output 2021-12-06 23:56:06 +01:00
Luflosi 4e0d9003fc
boinc: 7.14.2 -> 7.18.1 2021-12-06 23:56:06 +01:00
Luflosi a7be4f3840
boinc: add Luflosi as maintainer 2021-12-06 23:56:05 +01:00
github-actions[bot] ffbac7335b
Merge master into staging-next 2021-12-06 18:01:23 +00:00
7c6f434c 67f094f56b
Merge pull request #149043 from 7c6f434c/golly-update 
golly: 3.3 -> 4.1
 2021-12-06 16:17:35 +00:00
Michael Raskin 65b2df8b45 golly: 3.3 -> 4.1 2021-12-06 16:27:09 +01:00
R. Ryantm d5368e3bdb clingo: 5.5.0 -> 5.5.1 2021-12-06 09:34:25 +00:00
R. Ryantm 6c000f4835 calc: 2.13.0.1 -> 2.14.0.8 2021-12-06 07:03:08 +00:00
github-actions[bot] 5a1288f93b
Merge master into staging-next 2021-12-05 00:01:53 +00:00
Justin Bedő 711ef56370
Merge pull request #148514 from jbedo/picard 
picard-tools: 2.26.4 -> 2.26.6
 2021-12-05 06:56:25 +11:00
github-actions[bot] 67691cf506
Merge master into staging-next 2021-12-04 00:01:30 +00:00
markuskowa 660a7744c6
Merge pull request #148303 from markuskowa/add-elpa 
elpa: init at 2021.05.002_bugfix
 2021-12-03 22:52:58 +01:00
markuskowa 0016232876
Merge pull request #148350 from jbedo/genmap 
genmap: init 1.3.0
 2021-12-03 21:55:44 +01:00
Justin Bedo 17e3b75414
picard-tools: 2.26.4 -> 2.26.6 2021-12-04 07:51:31 +11:00
Justin Bedo 1a768ef4da
genmap: init 1.3.0 2021-12-04 06:51:16 +11:00
Jonathan Ringer 9fcf9be974
Merge remote-tracking branch 'origin/staging' into staging-next 
Conflicts:
	pkgs/development/python-modules/bx-python/default.nix
 2021-12-03 00:11:41 -08:00
Austin Seipp 2a295f42c8 symbiyosys: 2021.09.13 -> 2021.11.30 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-12-02 21:48:51 -06:00
Austin Seipp a79ca33d94 yosys: 0.10+1 -> 0.11+52, with abc update 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-12-02 21:48:51 -06:00
Bobby Rong 296de886d0
Merge pull request #148019 from hjones2199/kstars356 
kstars: 3.5.5 -> 3.5.6
 2021-12-03 09:24:39 +08:00
Jonathan Ringer 35f45f9dd7
Merge pull request #147426 from NixOS/python-unstable 
Python unstable 2021-11-25
 2021-12-02 15:56:12 -08:00
wackbyte 6a2815218d groove: 5.7.4 -> 5.8.1 and jre -> jre8 
I tested OpenJDK11 but it didn't seem to work.
 2021-12-02 22:18:13 +02:00
Markus Kowalewski 53f32adc65 cp2k: build with elpa 2021-12-02 17:22:41 +01:00
qbg b5b4a6ac4f
mathematica: Install desktop items (#147641) 2021-12-02 15:17:23 +02:00
Ryan Burns ac9ad0a998
Merge pull request #148240 from hjones2199/adopt-multi 
adopt multiple packages
 2021-12-01 23:34:28 -08:00
Hunter Jones b952a9b16e adopt multiple packages 2021-12-01 22:04:14 -06:00
Justin Bedo 82aef7957d
fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
Vincent Laporte 48406e3fca coq_8_14: 8.14.0 → 8.14.1 
And build Coq ≥ 8.14 with OCaml 4.12
 2021-12-01 13:46:15 +01:00
Jörg Thalheim e89d789748
Merge pull request #148096 from arkivm/fix-mrtrix 
mrtrix: 3.0.2 -> unstable-2021-11-25
 2021-12-01 10:27:11 +00:00
Doron Behar 43ed12450e
Merge pull request #147828 from doronbehar/pkg/maxima 2021-12-01 11:34:38 +02:00
Vikram Narayanan b1d95dca56 mrtrix: 3.0.2 -> unstable-2021-11-25 
The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
 2021-11-30 21:03:53 -08:00
Fabian Affolter c586350dfb
flatcam: add packaging 2021-11-30 18:52:55 -08:00
Doron Behar 50ba747abe yacas: Fix gui and jupyter build 
- Add a patch fixing jsoncpp include.
- Add a build flag for java support.
- Add a `yacas-gui` build that is built with Gui (and jupyter support disabled).
- Enable tests.
- Reformat expression with a 1 input / argument per line.
 2021-12-01 01:51:31 +02:00
Sandro 964a962222
Merge pull request #143545 from r-ryantm/auto-update/betaflight-configurator 2021-11-30 18:13:23 +01:00
Hunter Jones b04ef6a552 kstars: 3.5.5 -> 3.5.6 2021-11-30 08:13:12 -06:00
tilcreator 5989d54401 inav-configurator: init at 3.0.2 2021-11-30 15:11:55 +01:00
Sandro ebdd276b68
Merge pull request #147499 from trofi/fix-samtools-for-ncurses-6.3 2021-11-29 20:33:45 +01:00
Doron Behar 57ab62314b maxima, sage: Simplify lisp-compiler arguments namings 
Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
 2021-11-29 15:51:30 +02:00
Doron Behar 8d17f4babf maxima: 5.45.0 -> 5.45.1 
- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
 2021-11-29 15:51:29 +02:00
Doron Behar 8d227fe05c wxmaxima: 21.05.2 -> 21.11.0 
- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
 2021-11-29 14:41:57 +02:00
Dmitry Kalinkin 51bf009063
mxnet: 1.6.0 -> 1.8.0 2021-11-28 17:27:31 -05:00
Dmitry Kalinkin b39504da72
mxnet: fix for gcc10+, enable on darwin 2021-11-28 17:27:11 -05:00
Markus Kowalewski 5cfe3c4e82
gromacs: fix double precission build on aarch64 2021-11-28 12:43:57 +01:00
Dmitry Kalinkin b1b02f09ad
Merge pull request #147671 from trofi/fix-root5-for-binutils-2.36 
root5: binutils 2.37 fix
 2021-11-28 04:43:28 -05:00
Bernardo Meurer 51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Sandro 5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0 2021-11-28 03:51:46 +01:00
Markus Kowalewski 8fb36866b8
octopus: 11.2 -> 11.3 2021-11-28 00:04:47 +01:00
Chad Jablonski 7944324d80 programmer-calculator: 2.1 -> 2.2 2021-11-26 23:19:39 -05:00
Sergei Trofimovich 8147fb683c samtools: pull upstream fix for ncurses-6.3 
Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
 2021-11-26 13:02:05 +00:00
Ellie Hermaszewska 7282988ce9
Merge pull request #147394 from wirew0rm/bumpPicoscope 
picoscope: 7.0.83 -> 7.0.86 + LANG=C
 2021-11-26 09:33:26 +08:00
Sandro eff5cece35
Merge pull request #146648 from florentc/tlaplus 2021-11-25 12:38:31 +01:00
Justin Bedo c1eb0dddea
delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
Florent C b5d3526bab tlaplus: 1.7.0 -> 1.7.1 
This updates tlaplus to the most recent stable version and directly
fetches the tlatools jar file from the official Github release page
instead of building from the sources. In the previous tlaplus nix
package, there was an issue with the tools when passing some command
line arguments such as `-workers 4` for TLC. A java string method was
not found and the program would not proceed correctly. This solves this
issue.
 2021-11-25 10:56:11 +01:00
voidless a34736a38f geogebra6 6-0-644-0 -> 6-0-676-0 2021-11-24 23:15:54 +01:00
Alexander Krimm e248ab379a picoscope: set LANG=C in wrapper 
The picoscope application seems to crash for non-english locales. This
overrides the LANG environment variable to C. This does not affect the
language selected in the mono gtk GUI.
 2021-11-23 11:26:40 +01:00
Alexander Krimm d56073935d picoscope: 7.0.83 -> 7.0.86 
Update performed via update.py, other affected versions:
libps*: 2.1.75 -> 2.1.76
libpicoipp: 1.3.0-4r121 -> 1.3.0-4r130
 2021-11-23 11:21:26 +01:00
evils decac5a0d2
kicad-unstable: 2021-07-12 -> 6.0.0-rc1 (#142261) 
* kicad-unstable: 2021-07-12 -> 2021-11-10

with changes to library paths

Plugin and Content Manager seems to work
  (not related to the library paths changes)

* kicad-unstable: 2021-11-10 -> 6.0.0-rc1
 2021-11-23 00:05:57 -05:00
evils d2c4e0a3ba
kicad: 5.1.11 -> 5.1.12 (#145403) 
very minor change
5.1.11 was never officially released
  due to a re-tag
 2021-11-23 00:05:27 -05:00
github-actions[bot] 18ad263272
Merge master into staging-next 2021-11-21 18:01:07 +00:00
Artturi 8d6a02b049
Merge pull request #146787 from risicle/ris-hmmer-x86_64 2021-11-21 17:46:47 +02:00
Sandro 07f29d2db2
Merge pull request #146829 from r-burns/isx86 2021-11-21 14:20:12 +01:00
github-actions[bot] c68c4b3db8
Merge master into staging-next 2021-11-21 12:01:20 +00:00
7c6f434c b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R 
R: manually fix things after patches got applied
 2021-11-21 08:57:26 +00:00
github-actions[bot] 6ad93ecdbb
Merge master into staging-next 2021-11-21 06:01:18 +00:00
Ryan Burns 2175b157ac treewide: refactor isi686 && isx86_64 -> isx86 2021-11-20 17:50:41 -08:00
Mauricio Collares 1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro 00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
Robert Scott ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
AndersonTorres dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres 3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Jonathan Ringer fadaef5aed
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/applications/networking/browsers/chromium/common.nix
 2021-11-19 14:31:57 -08:00
Sandro ab9aa0dfeb
Merge pull request #146668 from rittelle/remove-rittelle 2021-11-19 21:56:17 +01:00
rittelle 4d8d035c6c
Removed rittelle from the maintainer list 2021-11-19 21:29:09 +01:00
Yurii Matsiuk 29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
github-actions[bot] 9d44a614de
Merge master into staging-next 2021-11-19 12:01:09 +00:00
Doron Behar 4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
github-actions[bot] cf671bd5e9
Merge master into staging-next 2021-11-17 12:01:23 +00:00
Sébastien Maret 7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Sébastien Maret 7eea330318
gildas: 20200901_a -> 20211101_a (#146224) 2021-11-17 01:03:57 -05:00
github-actions[bot] f8cf67790e
Merge master into staging-next 2021-11-17 06:01:28 +00:00
figsoda 6ad04bcb7d
Merge pull request #146243 from figsoda/treewide-rust-feature 
treewide: use buildFeatures and checkFeatures for rust packages
 2021-11-16 21:00:48 -05:00
github-actions[bot] ca7a3ad2e8
Merge master into staging-next 2021-11-16 18:01:14 +00:00
Sandro 0e4ef9ab2b
Merge pull request #139294 from shnarazk/kissat-init 2021-11-16 18:47:19 +01:00
figsoda 2448ef4630 elan: use buildFeatures 2021-11-16 08:11:49 -05:00
figsoda cc0e233801 finalfusion-utils: use buildFeature 2021-11-16 08:11:48 -05:00
github-actions[bot] cfaff97318
Merge staging-next into staging 2021-11-15 18:01:43 +00:00
Gabriel Ebner f4e3542f5d
Merge pull request #146162 from Kha/elan-wrap-lld 
elan: wrap embedded linker
 2021-11-15 18:07:14 +01:00
Sebastian Ullrich f8bbc587eb elan: wrap embedded linker 2021-11-15 17:10:04 +01:00
github-actions[bot] faf5da6aed
Merge staging-next into staging 2021-11-15 12:01:44 +00:00
Mario Rodas f20b2bb9f5
Merge pull request #143551 from r-ryantm/auto-update/scotch 
scotch: 6.0.4 -> 6.1.1
 2021-11-14 21:16:10 -05:00
Mario Rodas c8fb7191ad
Merge pull request #143541 from r-ryantm/auto-update/bcftools 
bcftools: 1.13 -> 1.14
 2021-11-14 21:14:30 -05:00
Robert Scott e4362cea6f monosat, python3Packages.monosat: fix for non-x86 2021-11-14 22:25:09 +00:00
Alyssa Ross 4e1852096f
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/tools/parsing/flex/2.6.1.nix
 2021-11-14 14:17:46 +00:00
Robert Scott 9149d366b9 boolector: add patch fixing build on aarch64-linux 2021-11-13 19:45:51 -06:00
Robert Scott 3b7766eac2 lingeling: pre1_03b4860d -> pre1_708beb26 2021-11-13 19:45:51 -06:00
Alyssa Ross 26b89bcd16
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 2021-11-13 15:30:01 +00:00
Thomas Watson 1564d88c41 redprl: unstable-2017-03-28 -> unstable-2019-11-04 2021-11-12 19:24:17 -06:00
github-actions[bot] 65356b24bf
Merge staging-next into staging 2021-11-12 18:01:48 +00:00
markuskowa db93862a2c
Merge pull request #145614 from sheepforce/openmolcas 
openmolcas: 21.06 -> 21.10
 2021-11-12 13:26:38 +01:00
Phillip Seeber c810f7befc openmolcas: 20.06 -> 20.10 2021-11-12 11:52:30 +01:00
Phillip Seeber ca7dd700e5 octopus: 10.5 -> 11.2 2021-11-12 11:47:59 +01:00
github-actions[bot] fd8fae936e
Merge staging-next into staging 2021-11-12 06:02:01 +00:00
Dmitry Kalinkin a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
github-actions[bot] 40a54af057
Merge staging-next into staging 2021-11-12 00:01:59 +00:00
Thiago Kenji Okada 5259293c10
Merge pull request #144899 from Luz/librepcb-0.1.6 
librepcb: 0.1.5 -> 0.1.6
 2021-11-11 15:06:19 -03:00
github-actions[bot] a4e03b8977
Merge staging-next into staging 2021-11-11 18:01:50 +00:00
Sandro 3260545bc7
Merge pull request #145056 from angustrau/logisim-evolution-3.7.1 2021-11-11 14:01:44 +01:00
Kerstin Humm bb799694db
epoxy: rename to libepoxy 
https://github.com/NixOS/nixpkgs/issues/145040
 2021-11-11 05:55:32 +01:00
xaverdh 03a257e5a3
treewide: quote urls according to rfc 0045 (#145260) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-11-10 11:37:56 +01:00
markuskowa 9995dbad24
Merge pull request #145251 from markuskowa/upd-gromacs 
gromacs: 2021.3 -> 2021.4
 2021-11-09 22:45:05 +01:00
Jörg Thalheim 584c5fc24d
Merge pull request #145161 from smancill/shogun-fix-build 
shogun: refactor derivation and fix build
 2021-11-09 20:49:19 +00:00
Sandro 9a9ef88b8c
Merge pull request #145178 from SuperSandro2000/applications 
Applications
 2021-11-09 21:33:41 +01:00
Sandro Jäckel b1c5442ceb
fixup! prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:26:04 +01:00
Sandro Jäckel 15d85dac80
redprl: switch to fetchFromGitHub, use postPatch 2021-11-09 20:10:31 +01:00
Sandro Jäckel 11c55d061e
prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:10:30 +01:00
Markus Kowalewski 430ad642a2
gromacs: 2021.3 -> 2021.4 2021-11-09 20:10:04 +01:00
Vincent Laporte b42501e1e7 proverif: 2.02pl1 → 2.03 
Do not build `proverif_interact` (that was not installed).
 2021-11-09 17:50:01 +01:00
Angus Trau 14580c7f4d logisim-evolution: 3.5.0 -> 3.7.1 2021-11-09 17:33:19 +11:00
Sebastián Mancilla 203db44ed4 shogun: fix compile errors with Eigen 3.4 
Fixes #142811.
 2021-11-09 00:27:13 -03:00
Sebastián Mancilla 82568e6718 shogun: refactor build 
Main changes are:

- Build with default stdenv instead of forcing GCC 8, by applying upstream
  patches that fix building with newer compilers.

  Together with #134390 and #134393 (and the blas library fixes on #135493
  and #136535), this enables building the derivation on darwin.

- Use multiple outputs.

- Move build-only inputs to nativeBuildInputs.

- Generate the meta examples but do not compile them (they are compiled as
  part of the tests), to not make the build take more time than already is.

  Install the example source files into $doc (but do not install the
  example binaries, only the sources).

- Enable testing by setting the CMake variable CMAKE_SKIP_BUILD_RPATH to
  false (it should not be needed if #108496 is merged). This allows the
  tests to locate the shogun library and run without problems.

  Disable integration and meta tests to speed up the build.

With a few other minor changes:

- Use upstream URL for the json-c patch.

- Be explicit about which optional, commercial dependencies are not used,
  to stop CMake searching for them.

- Do not set NIX_CFLAGS_COMPILE with '-faligned-new' because it causes a
  warning when compiling C files. Set CXXFLAGS instead.

- Remove unnecessary ccache variables from the environment.

- Fix wrong Google Mock download location, which was forcing CMake to need
  network access to download the tarball to the right location (which fails
  within the sandbox).
 2021-11-08 23:57:29 -03:00
Sebastián Mancilla 1e25b1831d shogun: add smancill to maintainers 2021-11-08 23:02:09 -03:00
Sebastián Mancilla 2dd5d704d5 shogun: format derivation 2021-11-08 23:01:59 -03:00
Bruno Bzeznik 4e5a245894 obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
Sandro f2c9cf39e5
Merge pull request #145006 from Artturin/spdlogupd 2021-11-07 23:04:28 +01:00
Artturin b4fab0a98b treewide: remove fmt from buildInputs where spdlog is used 
spdlog_1 has fmt_8 in propagatedBuildInputs and having fmt which points
to fmt_7 in buildInputs makes the builds use wrong fmt
 2021-11-07 22:05:08 +02:00
Felix Buehler b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő 7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
Matt Christ 065281add0 cemu: mark as broken on darwin 
https://github.com/NixOS/nixpkgs/pull/144889#issuecomment-962469610
 2021-11-06 13:54:44 -07:00
Matt Christ 2771743966 cemu: add link-time-compile-gen, build with gcc9stdenv 2021-11-06 13:54:44 -07:00
Luz 7a51cf9c1d librepcb: 0.1.5 -> 0.1.6 2021-11-06 17:35:58 +01:00