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Author SHA1 Message Date
Robin Gloster 0afc644cfd cbc: turn off format hardening 2016-02-09 01:35:33 +00:00
Robin Gloster 5808bfb977 yacas: no format hardening 2016-02-07 22:51:21 +00:00
Robin Gloster 8c91610cb2 content: remove 
Doesn't build and have been abandoned for years
 2016-01-30 20:31:05 +00:00
Vladimír Čunát 716aac2519 Merge branch 'staging' into closure-size 2016-01-19 09:55:31 +01:00
Mathieu Boespflug 545444cd19 R: add a new enableStrictBarrier package option. 
This option compiles R with --enable-strict-barrier. Doing so is
enables extra memory diagnostics in R that very useful for debugging
memory leak or memory protections issues in extensions to R written in
C, or for any apps embedding R (e.g. Haskell aps embedding R via
HaskellR).
 2016-01-17 11:09:05 +01:00
Vladimír Čunát 4858f3307e R: fix build after splitting gfortran.lib 
The extra flag was causing static libraries to be found (and used)
before dynamic ones. /cc #12085
 2016-01-12 23:57:48 +01:00
Asko Soukka a225a650bf R: fix Darwin build 
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
 2016-01-06 22:20:40 +01:00
Michael Raskin 51f8932c8e pari (PARI/GP): 2.7.4 -> 2.7.5 2016-01-01 12:30:17 +03:00
Michel Kuhlmann cebbb18e9e R: 3.2.2 -> 3.2.3 2015-12-11 11:36:30 +01:00
Aristid Breitkreuz 158e4ffd9c mathematica package patchPhase does not like set -e 2015-11-30 21:08:30 +01:00
Nikolay Amiantov 5ee5b5ba82 R: add curl for https support 2015-11-25 11:39:28 +01:00
Joachim Fasting 6d4ff90207 gap: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting 022bbe1c0c singular: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Karn Kallio 87b75c33ce R: advance to version 3.2.2. 
A test failing without recommended packages has been patched.
 2015-10-02 22:15:14 +02:00
Peter Simons ccd3e52b60 Merge pull request #9917 from FlorentBecker/sage 
Update sage to 6.8
 2015-09-30 17:28:36 +02:00
Vladimír Čunát 76ef7a93e3 Merge: xlibs and x11 attribute cleanup 
Frequently using multiple *almost* identical attributes is bad.
 2015-09-23 10:42:34 +02:00
Florent Becker b860b106c5 sage: 6.1.1 -> 6.8 2015-09-22 09:01:33 +00:00
Erik Rybakken 64c1a9a2e2 perseus: init at 4-beta 2015-09-19 00:56:24 +02:00
William A. Kennington III 773b4deb7c Merge commit 'a6f6c0e' into master.upstream 
This is a partial merge of staging where we have up to date binaries for
all packages.
 2015-09-15 12:16:49 -07:00
Vladimír Čunát 88c9f8b574 xlibs: replace occurrences by xorg 
This seems to have been confusing people, using both xlibs and xorg, etc.
- Avoided renaming local (and different) xlibs binding in gcc*.
- Fixed cases where both xorg and xlibs were used.
Hopefully everything still works as before.
 2015-09-15 12:54:34 +02:00
Vladimír Čunát 21e3ff658a x11: replace its usage by xlibsWrapper directly 
Scilab note: the parameters already had pointed to nonexistent dirs
before this set of refactoring. But that config wasn't even used by
default.
 2015-09-15 12:08:24 +02:00
Mathnerd314 eb7404d97a all-packages: Use callPackage where possible 2015-09-14 22:27:19 -06:00
Russell O'Connor 772ec9cae3 csdp: init at 6.1.1 2015-09-10 11:50:18 -04:00
Vladimír Čunát 8f33b8cc93 mass rewrite of find parameters to cross-platform style 
Fixes #9044, close #9667. Thanks to @taku0 for suggesting this solution.
Now we have no modes starting with `/` or `+`.

Rewrite the `-perm` parameters of find:
 - completely safe: rewrite `/0100` and `+100` to `-0100`,
 - slightly semantics-changing: rewrite `+111` to `-0100`.
I cross-verified the `find` manual pages for Linux, Darwin, FreeBSD.
 2015-09-06 10:26:30 +02:00
Eelco Dolstra 8fc039188e Mark some packages with undownloadable source as broken 2015-09-01 12:00:04 +02:00
Gabriel Ebner 6b42cd852a qalculate-gtk: init at 0.9.7 2015-08-31 19:20:29 +02:00
Eelco Dolstra f423ba3863 cbc: Enable on Darwin 2015-08-19 11:53:10 +02:00
Eelco Dolstra 80c137c7a2 Add cbc, a mixed ILP solver 2015-08-12 18:39:28 +02:00
Arseniy Seroka e9b5deb973 Merge pull request #8964 from vbgl/ecm 
ecm: 6.2.3 -> 6.4.4
 2015-07-26 20:09:10 +03:00
Sergey Mironov dcdd7a37f6 lp_solve: add the expression 2015-07-23 20:42:35 +02:00
Vincent Laporte 08750f988a ecm: 6.2.3 -> 6.4.4 2015-07-23 19:22:03 +02:00
William Casarin 8ead9cf0c5 caffe: init at rev 77d66dfc 
Initial version of the Caffe deep learning framework from Berkeley
 2015-07-08 10:07:10 -07:00
Michael Raskin d7dae65b5c pari: update 2.7.3 -> 2.7.4 2015-07-05 00:32:53 +03:00
Vincent Laporte 5beebaca58 fix glsurf 2015-06-25 08:55:29 +02:00
Michel Kuhlmann 46d46fd05a R: update to 3.2.1 2015-06-18 14:00:29 +02:00
Thomas Tuegel 4fb98dd6a7 jags: build with openblas 2015-06-12 07:56:04 -05:00
Thomas Tuegel e729a88474 R: build with openblas 
Fixes #6393.
 2015-06-04 17:42:04 -05:00
Tobias Geerinckx-Rice 158e1cfdd0 Don't use "with licenses;" for single licences 
And don't use square brackets on such lines.
 2015-05-28 19:20:29 +02:00
Tobias Geerinckx-Rice b2d7f4b1ba Use common licence attributes from lib/licenses.nix 
Many (less easily automatically converted) old-style strings
remain.

Where there was any possible ambiguity about the exact version or
variant intended, nothing was changed. IANAL, nor a search robot.

Use `with stdenv.lib` wherever it makes sense.
 2015-05-27 22:00:06 +02:00
Peter Simons c1e62e9e8b maxima: update to version 5.36.1 2015-05-13 12:17:16 +02:00
Peter Simons 645b1cea6e wxmaxima: update to 15.04.0 2015-05-13 12:17:01 +02:00
Peter Simons 324719a5a6 Drop obsolete pre-NG Haskell builds. 2015-05-05 21:44:47 +02:00
Peter Simons f82a287c20 R: update to 3.2.0 2015-04-17 20:02:46 +02:00
Aristid Breitkreuz a7e0cb38c2 update Mathematica to 10.0.2 2015-04-09 21:53:51 +02:00
Siarhei Zirukin f4cd5a68f7 pcalc: 20120812 -> 20141224 2015-03-24 18:27:42 +01:00
Peter Simons 3f7de179f5 R: update to version 3.1.3 2015-03-09 16:37:05 +01:00
Michael Raskin 0394ce7627 Update pari 2015-03-09 01:03:00 +03:00
Lluís Batlle i Rossell 569a02b725 Updating weka to 3.6.12. 
(cherry picked from commit cd417206f9)
 2015-02-13 16:22:39 +01:00
Shea Levy c45372f038 Merge commit 'cfb29ab882323d379aba20a95020c7c24f883eae' 
Partial staging merge, including cc-wrapper fixes

Conflicts:
	pkgs/applications/audio/spotify/default.nix
	pkgs/build-support/cc-wrapper/default.nix
	pkgs/development/compilers/cryptol/1.8.x.nix
 2015-02-02 21:14:28 -05:00
Peter Simons 96aa27c772 pspp: update from 0.8.2 to 0.8.3 2015-01-27 14:04:54 +01:00
Eric Seidel f272730399 rename <gcc-frontend>.gcc to <gcc-frontend>.cc 2015-01-14 20:59:10 -08:00
Eric Seidel 88eae46455 rename occurrences of gcc.gcc to gcc.cc 2015-01-14 20:47:49 -08:00
John Wiegley 28b6fb61e6 Change occurrences of gcc to the more general cc 
This is done for the sake of Yosemite, which does not have gcc, and yet
this change is also compatible with Linux.
 2014-12-26 11:06:21 -06:00
Peter Simons a9d779aa5d wxmaxima: update to version 14.12.1 2014-12-22 11:20:59 +01:00
Peter Simons 0dd52aba89 maxima: update to version 5.35.1 2014-12-22 11:20:58 +01:00
Peter Simons 67ddc8f4b9 R: add meta.platforms attribute 2014-12-03 16:28:28 +01:00
Eelco Dolstra 0518ccf5af Merge remote-tracking branch 'origin/master' into staging 
Conflicts:
	pkgs/stdenv/generic/default.nix
 2014-11-06 10:16:39 +01:00
Vincent Laporte 6e8a9b8145 wxmaxima: update from 13.04.2 to 14.09.0 2014-11-06 01:41:02 +00:00
Vladimír Čunát 52404a868d Merge recent master into staging 
Nixpkgs Hydra: ?compare=1157272

TODO: port e22889064f

Conflicts:
	nixos/tests/gnome3_10.nix (auto-solved)
	pkgs/applications/video/aegisub/default.nix
	pkgs/development/libraries/boost/1.55.nix
 2014-11-05 15:00:44 +01:00
Joachim Fasting 71a443c1b2 Add mirrors for sage 2014-11-03 23:04:44 +01:00
Peter Simons 109f19d749 Merge pull request #4788 from joachifm/sage 
sage fixes
 2014-11-03 11:16:56 +01:00
Joachim Fasting 6f7822ddda sage: fix download url for version 6.1.1 2014-11-02 20:55:08 +01:00
Joachim Fasting 82ec13eaa3 sage: fix meta information 
Correct homagepage, description, and license.
 2014-11-02 20:55:02 +01:00
Peter Simons a9c53037fa Merge remote-tracking branch 'origin/master' into staging. 2014-11-02 16:15:53 +01:00
Peter Simons ead6bc4a57 R: run the test suite only when recommended packages are built 2014-11-01 21:08:05 +01:00
Peter Simons 12e26d47b7 R: update to version R-3.1.2 2014-11-01 13:43:48 +01:00
Eelco Dolstra 09dc132e04 Merge remote-tracking branch 'origin/master' into staging 
Conflicts:
	pkgs/development/libraries/poppler/default.nix
 2014-10-16 15:16:50 +02:00
Vincent Laporte 9d5be8a757 maxima: update from 5.33.0 to 5.34.1 2014-10-10 21:55:16 +01:00
Eelco Dolstra a85dcf4a00 Merge remote-tracking branch 'origin/master' into staging 
Conflicts:
	pkgs/development/libraries/libav/default.nix
	pkgs/shells/bash/bash-4.2-patches.nix
	pkgs/stdenv/generic/default.nix
 2014-10-07 00:09:37 +02:00
Peter Simons 8ee5bd585f haskell-sloane: update to version 1.9.3 
This version supports the latest optparse-applicative.
 2014-10-06 11:21:39 +02:00
Michael Raskin 50e55fd793 Update PARI 2014-09-24 13:32:46 +04:00
Siarhei Zirukin 00298c7bba added pcalc package 2014-09-19 13:31:52 +02:00
Eelco Dolstra 91ec6e0d90 Merge remote-tracking branch 'origin/master' into staging 2014-09-18 22:28:35 +02:00
Aristid Breitkreuz 6fc7efa7b3 add mathematica 10 (slightly borked but runs) 2014-09-17 23:25:35 +02:00
Vladimír Čunát d957b4bd78 Merge recent master into staging 
Hydra nixpkgs: ?compare=1151601
 2014-09-13 21:48:29 +02:00
Peter Simons b9f7f19820 R: Revert update to version 3.1.1 
This reverts commit 6e803a684f. The new version
fails its test suite [1]. The issue has been reported upstream [2].

[1] http://hydra.cryp.to/build/191457/nixlog/1/raw
[2] https://bugs.r-project.org/bugzilla/show_bug.cgi?id=15975
 2014-09-13 20:03:44 +02:00
Pascal Wittmann 8d67b9a240 transformed meta.maintainers of some packages into lists 2014-09-13 13:52:02 +02:00
Peter Simons 6e803a684f R: update to version 3.1.1 2014-09-12 15:20:06 +02:00
Vladimír Čunát 82797f98f2 Merge branch 'staging' into modular-stdenv 
Conflicts:
	pkgs/development/interpreters/perl/5.10/setup-hook.sh
	pkgs/development/interpreters/perl/5.8/setup-hook.sh
	pkgs/stdenv/linux/default.nix
 2014-09-08 18:24:58 +02:00
Michael Raskin bacd3e852d Update pari 2014-09-02 14:25:17 +04:00
Bjørn Forsman c9baba9212 Fix many package descriptions 
(My OCD kicked in today...)

Remove repeated package names, capitalize first word, remove trailing
periods and move overlong descriptions to longDescription.

I also simplified some descriptions as well, when they were particularly
long or technical, often based on Arch Linux' package descriptions.

I've tried to stay away from generated expressions (and I think I
succeeded).

Some specifics worth mentioning:
 * cron, has "Vixie Cron" in its description. The "Vixie" part is not
   mentioned anywhere else. I kept it in a parenthesis at the end of the
   description.

 * ctags description started with "Exuberant Ctags ...", and the
   "exuberant" part is not mentioned elsewhere. Kept it in a parenthesis
   at the end of description.

 * nix has the description "The Nix Deployment System". Since that
   doesn't really say much what it is/does (especially after removing
   the package name!), I changed that to "Powerful package manager that
   makes package management reliable and reproducible" (borrowed from
   nixos.org).

 * Tons of "GNU Foo, Foo is a [the important bits]" descriptions
   is changed to just [the important bits]. If the package name doesn't
   contain GNU I don't think it's needed to say it in the description
   either.
 2014-08-24 22:31:37 +02:00
Eelco Dolstra e3f7dbbac8 Cleanup: Use += to append to envHooks 2014-08-09 12:47:05 +02:00
Vladimír Čunát 52d9c93abe Merge 'staging' into master 2014-08-08 20:13:23 +02:00
Eelco Dolstra 8a7f3c3618 Mark a bunch of packages as broken or not supported on Darwin 2014-08-08 17:59:02 +02:00
Peter Simons 9226fbf56a Merge remote-tracking branch 'origin/master' into staging. 2014-08-08 09:51:01 +02:00
Peter Simons 09ea413e17 haskell-sloane: update to version 1.9.1 2014-08-07 12:41:55 +02:00
Peter Simons 2d326e5032 Merge remote-tracking branch 'origin/master' into staging. 
Conflicts:
	pkgs/desktops/e18/enlightenment.nix
 2014-08-04 16:51:47 +02:00
Peter Simons d0ca8c237e Fix broken license references. 2014-07-28 11:43:20 +02:00
Peter Simons ad934ccc22 singular: cosmetic fix for syntax highlighting 2014-07-28 11:42:49 +02:00
Mateusz Kowalczyk 7a45996233 Turn some license strings into lib.licenses values 2014-07-28 11:31:14 +02:00
Eelco Dolstra b9d19af3e6 Merge remote-tracking branch 'origin/master' into staging 2014-07-15 12:14:35 +02:00
Peter Simons 5bfb58a8a2 Re-generate Haskell packages with cabal2nix. 2014-07-14 17:33:52 +02:00
Eelco Dolstra 95b828de42 Merge remote-tracking branch 'origin/master' into staging 2014-07-07 13:16:26 +02:00
Peter Simons 0d414a9399 haskell-sloane: update to version 1.8.2 2014-07-04 11:45:43 +02:00
Eelco Dolstra 06fc1ec34d Merge remote-tracking branch 'origin/master' into staging 
Conflicts:
	pkgs/servers/serfdom/default.nix
 2014-07-01 11:25:41 +02:00
Eelco Dolstra 40f7b0f9df Another attempt to eradicate ensureDir 
See c556a6ea46.
 2014-06-30 14:56:10 +02:00
Benno Fünfstück e10001042d fetchbzr, fetchdarcs, fetchhg: use rev attr 
This makes it match the behaviour of fetchgit and fetchsvn, so it's
easier to write scripts that support all of them.
 2014-06-28 21:06:10 +02:00
Peter Simons 1380b62fdb haskell-sloane: update to version 1.8 2014-06-13 15:41:25 +02:00
Ellis Whitehead a257d14925 R: install lib/libR.so for use by other programs such as RStudio 2014-05-17 21:35:02 +02:00
Peter Simons ef05fad51a R: don't restrict meta.platforms to Linux; other architectures should build fine 2014-05-04 22:04:44 +02:00
Peter Simons a9258080b1 R: don't install the "recommended packages" 
These packages come with R, but if we install them as part of this build, then
we cannot update them without re-building R as well. Instead, we add those
packages to the R environment through the r-wrapper. This means that
recommended packages can be updated in cran-packgaes.nix, and those updates
have an effect on the installation without re-building R itself.
 2014-05-04 21:12:34 +02:00
Peter Simons 4700996bc7 haskell-sloane: update to version 1.7.1 2014-05-01 21:57:03 +02:00
Eelco Dolstra fe4bc3cc80 Fix evaluation error 
http://hydra.nixos.org/build/10697257
 2014-04-29 20:40:28 +02:00
Peter Simons 6c5d7a63ac haskell-sloane: update to version 1.7 2014-04-29 01:35:45 +02:00
John Wiegley 7ce39b067a Add expression for sage 2014-04-22 14:10:36 -05:00
Peter Simons b5773eeccb R: update to version 3.1.0 2014-04-11 12:07:00 +02:00
Peter Simons f2cb92f5d4 maxima: update to version 5.33.0 2014-04-03 20:13:35 +02:00
Anders Claesson ac3de98f07 Add sloane -- a command line interface to OEIS. 2014-03-18 14:37:56 +00:00
Peter Simons 41e0214bb1 R: update to version 3.0.3 2014-03-07 22:51:39 +01:00
Peter Simons 5fefec3944 pspp: update from 0.8.1 to 0.8.2 2014-01-25 20:58:49 +01:00
Peter Simons 6475f0d1fe fricas: clean up meta section 2014-01-20 18:20:08 +01:00
Roger Mason 3d1f6e3a75 Add fricas, a computer algebra system 2014-01-20 18:11:09 +01:00
Peter Simons 25411b3c7b maxima: update to version 5.32.1 2014-01-13 17:05:45 +01:00
Nixpkgs Monitor 7289affced pari: update from 2.5.4 to 2.5.5 2013-12-21 02:28:25 +02:00
Nixpkgs Monitor b3f1ee3863 jags: update from 2.2.0 to 3.4.0 2013-12-18 18:18:32 +02:00
Jonas Hoersch 8487fdd209 mathematica: fix x86 build of mathematica 
the MathInstaller doesn't distinguish between 64bit and 32bit linux
platforms.
 2013-11-03 14:01:59 +01:00
Peter Simons cd1605f729 maxima: update to version 5.31.3 2013-11-01 10:53:44 +01:00
Peter Simons bf3e2d86cb wxmaxima: update to version 13.04.2 2013-10-13 00:39:06 +02:00
Peter Simons 568b39c672 maxima: update to version 5.31.2 2013-10-13 00:37:58 +02:00
Bjørn Forsman 083d0890f5 More description fixes 
* Remove package name
* Start with upper case letter
* Remove trailing period

Also reword some descriptions and move some long descriptions to
longDescription.

I'm not touching generated packages.
 2013-10-06 12:01:38 +02:00
Bjørn Forsman 28ac782583 Some description fixes 
There are many more packages to fix, this is just a start.

Rules:
 * Don't repeat the package name (not always that easy...)
 * Start with capital letter
 * Don't end with full stop
 * Don't start with "The ..." or "A ..."

I've also added descriptions to some packages and rewritten others.
 2013-10-05 19:36:23 +02:00
Eelco Dolstra fca11ef500 Fix evaluation errors 2013-10-01 13:12:45 +02:00
Justin Bedo fdc6e4372f Wrapped R's package system similarly to perlPackages 2013-09-28 13:19:43 +02:00
Alexander Kahl 6371fd0908 speedcrunch: new package 
speedcrunch is a fast power user calculator.
 2013-09-27 00:58:54 +02:00
Peter Simons 90f9726fa7 pspp: add version 0.8.1 2013-09-26 11:53:38 +02:00
Peter Simons 97bb401d8d R: update to 3.0.2 2013-09-25 16:40:55 +02:00
Jonas Hoersch 986b34580d add mathematica version 9.0.0 
Wolfram Mathematica based on the makeself archive found on the Mathematica installation DVD.
 2013-09-15 18:33:13 +02:00
Jason \"Don\" O'Conal f3802002c3 ginac: fix build on darwin (close #944) 2013-09-08 11:01:48 +02:00
Peter Simons dc5843399d maxima: add $out/bin to $PATH in the maxima wrapper scripts 
This ensures that Maxima's wrapper scripts (such as rmaxima) find the
correct maxima binary.
 2013-08-28 16:33:53 +02:00
Peter Simons 5fc7590886 maxima: update to version 5.30.0 2013-08-28 16:33:53 +02:00
Peter Simons 0237aa136f R: ensure that run-time dependencies can be found 2013-08-06 00:44:20 +02:00
Ertugrul Söylemez 2519a86942 pari: Updated to 2.5.4, fixed GMP and readline support. 2013-07-19 19:52:11 +02:00
Peter Simons 9185515611 R: add various features 
* Ensure that R can link blas, liblapack, and libgfortran at run-time.
 * Ensure that R can run the Tcl/Tk interpreter.
 * Add Java support.
 * Install texinfo and PDF documentation.
 2013-07-04 13:42:47 +02:00
Mathijs Kwik 0b17251c06 libpng: keep versioning in all-packages.nix, not in individual expressions 2013-06-27 21:35:21 +02:00
Lluís Batlle i Rossell 4c6a981070 Adding 'weka'. 2013-06-19 16:19:06 +02:00
Christophe Raffalli 102216f8c9 Drop useless dependencies in glsurf 2013-06-19 05:03:42 +02:00
Christophe Raffalli cb980d97d7 added glsurf package 2013-06-16 22:33:47 +02:00
Peter Simons 5779dfc8e4 R: add version 3.0.1 2013-05-23 11:35:59 +02:00
Peter Simons b72a91b6a5 wxmaxima: update to version 13.04.1 2013-05-22 11:21:55 +02:00
Peter Simons 7df21af242 wxmaxima: don't try to build this package on FreeBSD 2013-03-22 12:53:07 +01:00
Rickard Nilsson 1886d1db6a Merge remote-tracking branch 'upstream/master' into stdenv-updates 2013-01-20 16:53:21 +01:00
Peter Simons ff461b0755 maxima: update to version 5.29.1 2013-01-19 02:31:21 +01:00
Eelco Dolstra ab3eeabfed Rename buildNativeInputs -> nativeBuildInputs 
Likewise for propagatedBuildNativeInputs, etc.  "buildNativeInputs"
sounds like an imperative rather than a noun phrase.
 2012-12-28 19:20:09 +01:00
Peter Simons 24ec840736 wxmaxima: update to version 12.09.0 2012-10-19 10:12:31 +02:00
Peter Simons 5c59edb8f4 maxima: update to version 5.28.0 2012-10-19 10:12:31 +02:00
Peter Simons 55ea7dc453 wxmaxima: update to version 12.04.0 2012-07-07 22:20:18 +02:00
Peter Simons 0c107996d3 maxima: update to version 5.27.0 2012-07-07 22:20:18 +02:00
Yury G. Kudryashov 3640b0c1e9 Add GiNaC 
svn path=/nixpkgs/trunk/; revision=34403
 2012-06-09 13:09:41 +00:00
Eelco Dolstra bf2d945a02 * Disable some failing builds on specific platforms. 
svn path=/nixpkgs/trunk/; revision=34033
 2012-05-09 21:10:12 +00:00
Michael Raskin 6bc87a1ac8 Add packages to GAP 
svn path=/nixpkgs/trunk/; revision=33601
 2012-04-05 04:46:11 +00:00