Timo Kaufmann
e371a02b6c
sage: disable test timeout
...
I already did that once in 359bf7f1e3
.
That change mysteriously got lost somehow (presumably in some merge
commit).
Nix has its own timeout settings, so there is no risk in running
forever. At the same time, some tests can exceed the default timeout
(30minutes per file for --long tests) when run on many weak cores (like
the aarch64 community builder or some hydra builders).
2019-12-01 13:23:54 +01:00
Timo Kaufmann
afb9887dbd
sage: backport fix for threejs r109
2019-11-06 14:40:16 +01:00
Timo Kaufmann
f64885b9ca
sage: fix pkgconfig errors in tests
...
python.pkgs.pkgconfig raises an exception on missing packages since
version 1.5.0. Previously those errors were just silently ignored. That
worked fine, since the packages are only missing at runtime (when they
are not really needed) but present at buildtime.
Since this fails the tests now, we just add the packages to
PKG_CONFIG_PATH at runtime. This does not add additional runtime
dependencies. Still, it would be nicer if the sage testssuite would not
test the buildsystem at runtime in the first place.
The breakage was originally caused by the pkgconfig update in
1efa71616f
.
2019-11-06 14:40:13 +01:00
Timo Kaufmann
da7ec1c139
sage: ignore werkzeug immutable dict deprecation
2019-11-06 14:40:13 +01:00
Timo Kaufmann
f85ce834ce
sage: ignore deprecation warnings in rst2sws
...
Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the
functionality and the tests are soon to be removed with the py3 update
anyway.
2019-11-06 14:40:13 +01:00
Timo Kaufmann
af480796c9
sage: ignore cmp deprecation in sagenb
2019-11-06 14:40:13 +01:00
Timo Kaufmann
32827e35d8
sage: ignore attrs deprecation warning
...
cmp is deprecated since attrs 19.2.0:
http://www.attrs.org/en/19.2.0/changelog.html
The deprecation warning breaks the doctests. Fortunately they have a
rather long deprecation window, so we can just wait until upstream(s)
fix this.
2019-10-30 22:27:00 +01:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9
...
sage: 8.8 -> 8.9
2019-09-30 11:13:46 +00:00
Timo Kaufmann
d9176bee70
sage: 8.9.rc1 -> 8.9
2019-09-30 11:10:10 +02:00
R. RyanTM
faf9a73e2f
eclib: 20190226 -> 20190909
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eclib/versions
Relevant sage upstream ticket: https://trac.sagemath.org/ticket/28472
2019-09-26 16:41:50 +02:00
Timo Kaufmann
78741fc409
sage: 8.9.rc0 -> 8.9.rc1
2019-09-25 10:19:04 +02:00
Timo Kaufmann
1797c9c295
sage: 8.9.beta9 -> 8.9.rc0
...
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224 ), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg ) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
2019-09-24 17:51:09 +02:00
Timo Kaufmann
5aba3be6f9
sage: 8.9.beta8 -> 8.9.beta9
2019-09-23 18:50:59 +02:00
Timo Kaufmann
8593d468ae
Merge remote-tracking branch 'upstream/master' into sage-8.9
2019-09-23 17:11:15 +02:00
Timo Kaufmann
cbe12344ca
sage: add pager to environment
...
Temporary fixup while waiting for an upstream fix.
2019-09-23 15:14:43 +02:00
volth
7b8fb5c06c
treewide: remove redundant quotes
2019-09-08 23:38:31 +00:00
Timo Kaufmann
84578046aa
sage: 8.9.beta7 -> 8.9.beta8
2019-09-03 15:34:28 +02:00
volth
08f68313a4
treewide: remove redundant rec
2019-08-28 11:07:32 +00:00
Timo Kaufmann
071a4db33e
sage: 8.9.beta6 -> 8.9.beta7
2019-08-19 00:16:06 +02:00
Timo Kaufmann
e8436f5e23
sage: 8.9.beta5 -> 8.9.beta6
2019-08-18 21:52:27 +02:00
Frederik Rietdijk
fe9a3e3e63
Merge staging-next into staging
2019-08-17 09:39:23 +02:00
Timo Kaufmann
192197dc6c
Merge pull request #65802 from timokau/sage-transient-debug
...
sage: add patch to debug transient issue
2019-08-17 00:33:05 +02:00
Timo Kaufmann
41bb319462
sage: avoid running out of memory during tests
2019-08-16 23:50:55 +02:00
volth
46420bbaa3
treewide: name -> pname (easy cases) ( #66585 )
...
treewide replacement of
stdenv.mkDerivation rec {
name = "*-${version}";
version = "*";
to pname
2019-08-15 13:41:18 +01:00
Timo Kaufmann
f6265b0da5
sage: default to long tests again
...
Changed by accident in 5e58c5f900
.
2019-08-09 18:42:14 +02:00
Timo Kaufmann
9ef44b3431
sage: move sympow cache to .sage
2019-08-09 17:45:14 +02:00
Timo Kaufmann
5e58c5f900
sympow: 1.018.1 -> 2.023.4
...
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17
This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
2019-08-09 17:45:08 +02:00
Timo Kaufmann
ddd3faf08e
sage: 8.9.beta4 -> 8.9.beta5
2019-08-07 15:33:15 +02:00
Timo Kaufmann
f6a1fe64eb
sage: 8.9.beta3 -> 8.9.beta4
2019-08-02 23:50:45 +02:00
Timo Kaufmann
69d9700c61
sage: add list of past test failures
2019-08-02 18:09:18 +02:00
Timo Kaufmann
dac4719e0b
sage: add patch to debug transient issue
2019-08-02 18:09:15 +02:00
Timo Kaufmann
b884552c35
sage: 8.9.beta2 -> 8.9.beta3
2019-08-02 01:03:33 +02:00
Timo Kaufmann
56bd506e42
sage: 8.9.beta0 -> 8.9.beta2
2019-07-11 19:42:01 +02:00
Frederik Rietdijk
25a77b7210
Merge staging-next into staging
2019-07-03 08:59:42 +02:00
Timo Kaufmann
924c321e8a
sage: 8.8 -> 8.9.beta0
2019-07-02 23:02:36 +02:00
worldofpeace
3f4a353737
treewide: use dontUnpack
2019-07-01 04:23:51 -04:00
Timo Kaufmann
5b2db39c49
sage: 8.8.rc2 -> 8.8
2019-06-27 22:05:30 +02:00
Timo Kaufmann
e7d4386e0e
sage: 8.8.rc1 -> 8.8.rc2
2019-06-27 22:03:00 +02:00
Timo Kaufmann
218fd843a3
sage: 8.8.rc0 -> 8.8.rc1
2019-06-27 22:03:00 +02:00
Timo Kaufmann
409bee28b6
sage: 8.8.beta7 -> 8.8.rc0
2019-06-27 22:03:00 +02:00
Timo Kaufmann
c76e8fa86e
sage: 8.8.beta6 -> 8.8.beta7
2019-06-27 22:02:57 +02:00
Timo Kaufmann
9f434d7080
sage: 8.8.beta5 -> 8.8.beta6
2019-06-27 22:01:40 +02:00
Timo Kaufmann
325a5037bf
sage: 8.8.beta4 -> 8.8.beta5
2019-06-27 22:01:37 +02:00
Timo Kaufmann
240d4c31d2
sage: 8.8.beta3 -> 8.8.beta4
2019-06-27 21:57:33 +02:00
Timo Kaufmann
608948e3e9
sage: 8.8.beta2 -> 8.8.beta3
2019-06-27 21:57:33 +02:00
Timo Kaufmann
21c1ab6776
sage: 8.7 -> 8.8.beta2
2019-06-27 21:57:27 +02:00
Timo Kaufmann
9955657209
sage: fix online threejs
2019-06-20 12:50:00 +02:00
Timo Kaufmann
2d78d928cd
sage: backport threejs r100 compatibility
...
https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429
2019-06-20 12:50:00 +02:00
Timo Kaufmann
6e74109b13
sage: fix threejs integration ( #63375 )
...
Before this it didn't find the correct files. Unfortunately, the
interactive parts of sage are hard to test automatically.
2019-06-18 11:50:41 +02:00
volth
f3282c8d1e
treewide: remove unused variables ( #63177 )
...
* treewide: remove unused variables
* making ofborg happy
2019-06-16 19:59:05 +00:00
Robin Gloster
6cf583cf2f
Merge pull request #60406 from JohnAZoidberg/remove-isnull
...
treewide: Remove usage of isNull
2019-05-18 09:36:24 +00:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 ( #61285 )
...
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:
https://trac.sagemath.org/ticket/24214
2019-05-11 16:09:07 +02:00
Daniel Schaefer
786f02f7a4
treewide: Remove usage of isNull
...
isNull "is deprecated; just write e == null instead" says the Nix manual
2019-04-29 14:05:50 +02:00
Timo Kaufmann
6dabc28cd0
sage: add compatibility for R 3.6.0
...
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
2019-04-29 13:37:07 +02:00
Timo Kaufmann
af6739fdd7
gap: 4.10.0 -> 4.10.1
2019-04-20 09:54:27 +02:00
Timo Kaufmann
49b8efcb84
sage: 8.6 -> 8.7
...
https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro
2019-04-17 22:44:32 +02:00
Timo Kaufmann
e0e5445667
sage: fix another transient sig_on bug
...
Caused a test failure on hydra, backporting upstream fix.
2019-04-17 19:58:07 +02:00
Timo Kaufmann
62c288ec20
python.pkgs.sympy: 1.3 -> 1.4 ( #59482 )
2019-04-14 17:52:03 +02:00
Timo Kaufmann
ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 ( #59085 )
2019-04-06 21:46:13 +00:00
Timo Kaufmann
69555825f8
eclib: 20180815 -> 20190226 ( #58801 )
...
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360 .
2019-04-02 15:39:20 +00:00
Timo Kaufmann
5fc5881221
sage: backport bugfix ( #57794 )
2019-03-17 14:36:01 +00:00
Timo Kaufmann
ce96994032
sage: fix docbuild ( #57294 )
...
The docbuild (or rather its tests) failed because sphinx built some
English parts of the documentation in Russian. The added debian patch
fixes that by isolating docbuilding threads in sphinx using
proper subprocesses.
2019-03-10 21:42:54 +00:00
Timo Kaufmann
23908a0ee3
sage: downgrade maxima to 5.41
...
See discussion at
82254747af
.
2019-03-09 17:23:57 +01:00
Timo Kaufmann
9e3754786b
sage: fix strictDeps fallout
...
See https://github.com/NixOS/nixpkgs/pull/54182 and
https://github.com/NixOS/nixpkgs/pull/55757 .
2019-03-03 13:25:40 +01:00
Timo Kaufmann
2de81ee78f
sage: patch for pip 19
...
pip 19 introduced a deprecation warning for python 2.7. Since sage
internally uses pip to query for installed packages, this deprecation
warning will show up at unexpected times. That is ugly and messes with
the testsuite.
Upstream: https://trac.sagemath.org/ticket/27405
2019-03-03 13:21:22 +01:00
Jörg Thalheim
dadc7eb329
treewide: use runtimeShell instead of stdenv.shell whenever possible
...
Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.
2019-02-26 14:10:49 +00:00
Timo Kaufmann
9243e85fbc
sage: fix fetchSageDiff ( #55783 )
...
For some reason I changed it to use `cgit`s `rawdiff` instead of `patch`
in the update to sage 8.6. Probably commited that by accident, at least
I can't remember the reason. Also changed the excludes filter, the
leading slash prevented it from working.
As a result, the cypari2 patch changed. Only didn't notice because it
was cached.
Fixes #55780
2019-02-14 21:48:03 +01:00
Timo Kaufmann
5728028916
sage: add numpy 1.16 compatibility patch
...
https://trac.sagemath.org/ticket/27000
2019-02-11 21:43:56 +01:00
Timo Kaufmann
342333c0ab
sage: add compatibility for sphinx 1.8.3 ( #55078 ) ( #55560 )
...
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186 , this needs to be done
separately.
(cherry picked from commit 33db01e6d9
)
2019-02-11 13:18:16 +01:00
Vladimír Čunát
d2c4b5777b
sagelib: fix missing pkgs.pkgconfig
...
Again: eb3f0aef43
#54306
Apparently the derivation needs both pkgconfigs
(it fails when missing either).
2019-02-09 10:36:47 +01:00
Robert Schütz
052acfe930
sage: python-openid: move django and twill to checkInputs ( #54949 )
...
A search through the source code
(https://github.com/openid/python-openid/search?q=django and
https://github.com/openid/python-openid/search?q=twill ) reveals
that they are only used in examples and tests.
2019-01-31 10:14:36 +01:00
Timo Kaufmann
d34f44db45
sage: fix transient ecl error ( #54285 )
...
Sometimes the doctests fail because ecl races to create a directory.
This should fix that by making sure each process has its own directory.
2019-01-18 23:02:03 +01:00
Timo Kaufmann
e379ee67c3
sage: 8.5 -> 8.6
2019-01-17 20:39:02 +01:00
Timo Kaufmann
a8dbc5e313
python.pkgs.cypari2: 1.3.1 -> 2.0.3 ( #54093 )
...
Upstream issues should be fixed now, see https://trac.sagemath.org/ticket/26442 .
Sage needs a patch to adapt.
2019-01-16 22:15:40 +01:00
Timo Kaufmann
22c16ed300
Merge remote-tracking branch 'upstream/master' into sage-8.5
2018-12-29 12:16:02 +01:00
Timo Kaufmann
95909d4fb6
Revert "sage: preload openblasCompat"
...
This reverts commit 4900bbee17
.
The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
2018-12-28 23:06:05 +01:00
Timo Kaufmann
360eddd3a3
sage: remove outdated patch files
2018-12-28 23:06:05 +01:00
Timo Kaufmann
6f0f06ec89
sage: 8.5.rc1 -> 8.5
2018-12-28 23:06:05 +01:00
Timo Kaufmann
b09967d812
sage: 8.5.rc0 -> 8.5.rc1
2018-12-16 21:33:28 +01:00
Timo Kaufmann
90bc5ce04d
sage: 8.5.beta5 -> 8.5.beta6
2018-12-10 19:36:24 +01:00
Symphorien Gibol
b5435d0551
giac: 1.4.9 -> 1.5.0
2018-12-09 23:18:46 +01:00
Timo Kaufmann
5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 ( #49446 )" ( #51414 )
...
This reverts commit d9b650f4cc
.
The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442 .
2018-12-03 00:44:33 +01:00
Timo Kaufmann
88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix
...
sage: misc fixes
2018-12-01 22:04:48 +01:00
Timo Kaufmann
0e570199de
sage: fix jmol integration
2018-12-01 21:31:29 +01:00
Timo Kaufmann
cb73495f02
sagenb: fix matplotlib path
2018-12-01 20:41:40 +01:00
Timo Kaufmann
d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 ( #49446 )
2018-12-01 12:57:55 +01:00
Timo Kaufmann
d6376bca6d
sage: don't test the downgraded R
...
Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249 . The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
2018-11-28 22:52:15 +01:00
Timo Kaufmann
359bf7f1e3
sage: disable test timeout
...
Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
2018-11-28 22:37:24 +01:00
Timo Kaufmann
4900bbee17
sage: preload openblasCompat
2018-11-28 20:44:09 +01:00
Timo Kaufmann
7ca2915a50
sage: 8.5.beta4 -> 8.5.beta5
2018-11-27 18:26:16 +01:00
Timo Kaufmann
2dd9a0ed72
Merge remote-tracking branch 'upstream/master' into sage-8.5
2018-11-27 18:25:39 +01:00
Timo Kaufmann
90cebaf828
sage: 8.5.beta3 -> 8.5.beta4
2018-11-25 19:39:18 +01:00
Timo Kaufmann
2a87caa892
sage: 8.5.beta2 -> 8.5.beta3
2018-11-25 19:39:17 +01:00
Timo Kaufmann
3370247f7f
sage: 8.5.beta1 -> 8.5.beta2
2018-11-25 19:39:17 +01:00
Timo Kaufmann
883aa99226
sage: add short tests
2018-11-25 19:39:13 +01:00
Timo Kaufmann
8e7da1b8a4
sage: 8.5.beta0 -> 8.5.beta1
2018-11-25 19:36:21 +01:00
Timo Kaufmann
6138f5d5eb
sage: 8.4 -> 8.5.beta0
2018-11-25 19:36:21 +01:00
Timo Kaufmann
2fbde72556
sage: add tkinter as matplotlib backend ( #51032 )
...
Fixes #50959 .
2018-11-25 17:38:45 +01:00
Timo Kaufmann
98c94d3d7d
sage: add jupyter notebook support
...
Fixes #48544 .
2018-11-25 15:54:31 +01:00
Timo Kaufmann
a0723f1285
sage: don't fix node version
2018-11-24 23:14:38 +01:00