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Author SHA1 Message Date
Ryan Mulligan 2a0d98d319
Merge pull request #163638 from r-ryantm/auto-update/siril 
siril: 0.99.10.1 -> 1.0.0
 2022-03-15 14:56:47 -07:00
Ryan Mulligan 7e1cc45b66
Merge pull request #162443 from r-ryantm/auto-update/phd2 
phd2: 2.6.10 -> 2.6.11
 2022-03-15 14:56:29 -07:00
Martin Weinelt 8d18f29b60
Merge pull request #161366 from NixOS/staging-next 
Staging next 2022-02-22
 2022-03-15 22:31:01 +01:00
Ben Siraphob cc7b9eac78
Merge pull request #164195 from siraben/nuXmv-init 2022-03-15 18:53:13 +00:00
Ben Siraphob b39792d141
nuXmv: init at 2.0.0 2022-03-15 13:50:58 -05:00
Vladimír Čunát b61852cd94
Merge branch 'master' into staging-next 2022-03-15 18:08:32 +01:00
Rasmus Thomsen 69895c6248
bada-bib: 0.5.1 -> 0.6.0 2022-03-15 12:50:26 +01:00
Jakub Dupak b72a99d718 QtRVSim: 0.9.1 -> 0.9.2 2022-03-14 22:04:17 +02:00
github-actions[bot] 0ed928e4ab
Merge master into staging-next 2022-03-14 12:01:26 +00:00
Mauricio Collares 5240cbc0d8 sage: adapt tachyon interface for 0.99.3 2022-03-13 16:53:22 -03:00
R. Ryantm 6d61669d69 jmol: 14.32.30 -> 14.32.33 2022-03-13 16:20:57 +00:00
github-actions[bot] 1630ab9b47
Merge master into staging-next 2022-03-13 06:05:11 +00:00
Jakub Dupak d09489e5f1
QtRvSim: init at 0.9.1 (#163128) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-13 03:08:40 +01:00
github-actions[bot] 6f7d104254
Merge master into staging-next 2022-03-13 00:02:14 +00:00
Sandro 529b89d755
Merge pull request #161434 from collares/lean-3.40.0 2022-03-12 23:43:20 +01:00
Sandro 8057801ad7
Merge pull request #163849 from fedeinthemix/add-xschem-2 2022-03-12 22:32:08 +01:00
R. Ryantm 29d7a27d9f opensmt: 2.2.0 -> 2.3.0 2022-03-12 17:44:51 +00:00
Federico Beffa 5d702c6b23 gaw: init at version 20200922 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-12 17:50:10 +01:00
Federico Beffa a40de4b146 xschem: init at version 3.0.0 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-12 17:49:48 +01:00
github-actions[bot] 7573d7fe79
Merge master into staging-next 2022-03-11 18:01:20 +00:00
Renaud 28721c55c5
Merge pull request #160342 from Luflosi/update/yosys 
yosys: 0.12+54 -> 0.15
 2022-03-11 18:15:51 +01:00
Mauricio Collares bab25a7a3a lean: 3.40.0 -> 3.41.0 2022-03-11 11:40:27 -03:00
R. Ryantm f764458ed2 siril: 0.99.10.1 -> 1.0.0 2022-03-10 22:40:03 +00:00
Justin Bedo 3739a7819d
R: 4.1.2 -> 4.1.3 2022-03-10 22:31:13 +11:00
github-actions[bot] 201cc2f89b
Merge master into staging-next 2022-03-09 00:02:05 +00:00
Luflosi 0e4d199cbd
abc-verifier: 2021.11.12 -> 2022.03.04 2022-03-08 18:28:13 +01:00
R. Ryantm e0c3da7946 jmol: 14.32.28 -> 14.32.30 2022-03-08 16:34:40 +00:00
github-actions[bot] 68a45fb1f2
Merge master into staging-next 2022-03-06 18:01:10 +00:00
R. Ryantm f3288c60f0 marvin: 22.3.0 -> 22.7.0 2022-03-06 07:45:27 +00:00
github-actions[bot] 3f8e60728f
Merge master into staging-next 2022-03-06 06:01:06 +00:00
Bobby Rong cf7e4cac05
Merge pull request #161194 from wucke13/mission-planner 
mission-planner: 1.3.74 -> 1.3.76
 2022-03-06 13:28:50 +08:00
github-actions[bot] 9dd2a8b600
Merge master into staging-next 2022-03-06 00:02:10 +00:00
Dmitry Kalinkin 149d68268d
root: fix ROOTConfig.cmake.in patching 2022-03-04 21:04:19 -05:00
github-actions[bot] d4bfb57f40
Merge master into staging-next 2022-03-05 00:01:54 +00:00
7c6f434c d5058ae9e5
Merge pull request #162688 from r-ryantm/auto-update/jmol 
jmol: 14.32.24 -> 14.32.28
 2022-03-04 20:43:10 +00:00
github-actions[bot] 437813752b
Merge master into staging-next 2022-03-04 18:01:19 +00:00
Bruno Bzeznik 7d62054650 angsd: init at 0.937 2022-03-04 09:17:35 -06:00
github-actions[bot] fc22d0d5e2
Merge master into staging-next 2022-03-04 12:01:33 +00:00
Matthew Wakefield e85b65f986
minimap2: enable aarch64 builds (#161169) 
Co-authored-by: Bobby Rong <rjl931189261@126.com>
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-04 12:27:29 +01:00
R. Ryantm f5258a7d12 jmol: 14.32.24 -> 14.32.28 2022-03-03 23:44:55 +00:00
github-actions[bot] 12423e2e92
Merge master into staging-next 2022-03-02 12:05:47 +00:00
R. Ryantm 04ee1b8975 phd2: 2.6.10 -> 2.6.11 2022-03-02 03:13:28 +00:00
Justin Bedo 89eff15f31
last: 1260 -> 1268 2022-03-02 13:35:56 +11:00
Jan van Brügge c1ef185bdb
isabelle: Use naproche from nixpkgs 2022-03-01 13:43:38 +01:00
Jan van Brügge 2b71e68503
naproche: init at 0.1.0.0 2022-03-01 13:43:37 +01:00
github-actions[bot] 4ae3f9a06c
Merge master into staging-next 2022-03-01 12:05:54 +00:00
Gabriel Ebner 8934eb7c91
Merge pull request #157843 from jvanbruegge/isabelle_setup 
isabelle: Rebuild isabelle_setup.jar
 2022-03-01 12:11:25 +01:00
github-actions[bot] bfb0bc0461
Merge master into staging-next 2022-02-28 18:05:41 +00:00
Sandro b7ec0afb59
Merge pull request #162205 from Stunkymonkey/treewide-vVersion 2022-02-28 14:26:16 +01:00
Felix Buehler 1573dbdcd0 treewide: fix versions starting with 'v' 2022-02-28 13:05:18 +01:00
github-actions[bot] e71c1249e8
Merge master into staging-next 2022-02-28 12:01:10 +00:00
Felix Buehler fe7678ca81 raxml-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
Felix Buehler 13dca33cdc neuron-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
Bobby Rong f35d1b8568
Merge pull request #160332 from florentc/tlaps 
tlaps: 1.4.3 -> 1.4.5
 2022-02-28 16:33:42 +08:00
github-actions[bot] 6787116890
Merge master into staging-next 2022-02-28 00:02:07 +00:00
Guillaume Girol b9ecdae495
Merge pull request #161344 from ulrikstrid/ulrikstrid/tree-wide-native-inputs 
ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs
 2022-02-27 19:49:07 +00:00
7c6f434c da576d8a4a
Merge pull request #161876 from FRidh/sage-python 
Sage: make it possible to extend the Python runtime environment with additional packages
 2022-02-27 19:02:59 +00:00
AndersonTorres ed2b1b4b90 Merge branch 'master' into staging-next 2022-02-26 21:04:25 -03:00
Vincent Laporte 68e4b639a3
Merge pull request #161111 from ulrikstrid/ulrikstrid/coq-move-dune-to-native 
coq: Move dune, ocaml and findlib to nativeBuildInputs
 2022-02-26 08:54:53 +01:00
R. Ryantm 21a1125f37 gmsh: 4.9.4 -> 4.9.5 2022-02-25 14:21:11 -08:00
K900 cb2cfba6f7 treewide: switch all desktop file generators to new API 
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
 2022-02-25 13:40:38 -08:00
Frederik Rietdijk 330d9344d2 sage: make it possible not to rebuild sage-tests 
Requiring sage-tests as build input just so it gets build is a bit
unfortunatey but understandable. This commit introduces an option to not
add sage-tests as a dependency. This is preferred in case e.g. Python
packages are added to the environment.
 2022-02-25 21:27:14 +01:00
Frederik Rietdijk 7442533bf1 sage: support adding extra Python packages to environment 
mysage = sage.override { extraPythonPackages = ps: with ps; [ dask ]; };

Note that the sage-tests are executed again as well, which is not very nice.
 2022-02-25 21:18:23 +01:00
R. Ryantm 1e7c64aae1 bcftools: 1.14 -> 1.15 2022-02-25 11:12:05 -08:00
markuskowa 49186d631f
Merge pull request #161635 from r-ryantm/auto-update/jmol 
jmol: 14.32.21 -> 14.32.24
 2022-02-25 13:42:31 +01:00
Ulrik Strid 7e20e9039e coqPackages: tree-wide move packages to nativeBuildInputs and add strictDeps = true 
Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
 2022-02-25 07:54:17 +01:00
Vincent Laporte 056c34167d why3: 1.4.0 → 1.4.1 2022-02-25 06:00:09 +01:00
Justin Bedő 6b477d556d
Merge pull request #161695 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.10 -> 2.26.11
 2022-02-25 08:27:23 +11:00
R. Ryantm d6a24fc108 cwltool: 3.1.20220217222804 -> 3.1.20220221074232 2022-02-24 15:52:49 -05:00
R. Ryantm ce9d28cc49 picard-tools: 2.26.10 -> 2.26.11 2022-02-24 17:34:18 +00:00
Ulrik Strid 48df7cdbba coq: Move dune to nativeBuildInputs and add ocaml, findlib and menhir 2022-02-24 14:39:45 +01:00
Ulrik Strid a13cdfe520 ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs 
To keep this for the future we also strictDeps where possible, including for janePackages, topkg, oasis and ocamlbuild.
This makes some closures significantly smaller and makes cross compilation easier
 2022-02-24 14:39:27 +01:00
R. Ryantm 1b8518cadd jmol: 14.32.21 -> 14.32.24 2022-02-24 08:42:12 +00:00
github-actions[bot] cd6011bf17
Merge master into staging-next 2022-02-24 00:02:03 +00:00
Renaud 65ecaa9903
Merge pull request #150078 from r-ryantm/auto-update/gurobi 
gurobi: 9.1.2 -> 9.5.0
 2022-02-23 22:08:43 +01:00
github-actions[bot] 37f89e2837
Merge master into staging-next 2022-02-23 18:01:10 +00:00
Markus Kowalewski 469ae42107
gromacs: 2021.5 -> 2022 2022-02-23 14:47:26 +01:00
Renaud a723c88d4e
Merge pull request #159967 from r-ryantm/auto-update/workcraft 
workcraft: 3.3.5 -> 3.3.6
 2022-02-23 13:30:39 +01:00
github-actions[bot] 10c4b97b44
Merge master into staging-next 2022-02-23 12:01:11 +00:00
Renaud 359d63179e
Merge pull request #160360 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.22.0 -> 4.0.0
 2022-02-23 08:30:49 +01:00
Mauricio Collares 4ba9b2d198 lean: 3.39.2 -> 3.40.0 2022-02-22 21:02:08 -03:00
github-actions[bot] ac0e0313b5
Merge staging-next into staging 2022-02-22 06:01:53 +00:00
Bobby Rong 93883402a4
Merge pull request #160594 from Cogitri/bada-bib 
bada-bib: 0.4.1 -> 0.5.1
 2022-02-22 12:10:40 +08:00
github-actions[bot] f8210665fc
Merge staging-next into staging 2022-02-22 00:02:51 +00:00
Mauricio Collares 586b897693 sage: update test expectations for stack_data 0.2.0 2022-02-21 14:49:16 -08:00
Wanja Zaeske 2d67cc2bf6 removing maintainer wucke13 from some packages 2022-02-21 22:58:18 +01:00
ajs124 55bf481a21
Merge pull request #159212 from helsinki-systems/init/febio-studio 
febio-studio: init at 1.6.1
 2022-02-21 17:24:33 +01:00
Scriptkiddi 4e60a4823b febio-studio: init at 1.6.1 2022-02-21 16:43:36 +01:00
Rasmus Thomsen 87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1 2022-02-21 16:33:50 +01:00
Wanja Zaeske 58d5eb70e2 mission-planner: 1.3.74 -> 1.3.76 2022-02-21 09:51:16 +01:00
R. Ryantm c35aa0a0f3 cwltool: 3.1.20220217190813 -> 3.1.20220217222804 2022-02-21 01:31:33 -05:00
markuskowa 48ab0d0233
Merge pull request #160924 from qbg/submit/mathematica-13.0.1 
mathematica: 13.0.0 -> 13.0.1
 2022-02-20 10:23:22 +01:00
R. RyanTM 286ecff9e0
getdp: 3.3.0 -> 3.4.0 
(#150127)
 2022-02-19 22:41:33 +01:00
Mario Rodas 94723d21f9
Merge pull request #159540 from r-ryantm/auto-update/marvin 
marvin: 21.20.0 -> 22.3.0
 2022-02-19 15:59:08 -05:00
qbg f4f52d9d70 mathematica: 13.0.0 -> 13.0.1 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2022-02-19 11:26:53 -06:00
Millian Poquet bc2604732e simgrid: mark as broken on darwin 2022-02-19 10:05:17 +01:00
Millian Poquet 3f804f68bc simgrid: 3.28 -> 3.30 + python + clean 
- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
 2022-02-19 10:05:12 +01:00
Ulrik Strid 4150bf02b5 coq: allow static linking by moving wrapGAppsHook to nativeBuildInputs 
Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
 2022-02-18 15:17:04 +01:00
Mario Rodas 947c98310c
Merge pull request #160545 from collares/lean-3.39.2 
lean: 3.39.1 -> 3.39.2
 2022-02-18 06:26:51 -05:00
R. Ryantm b715fcd9d9 cwltool: 3.1.20220210171524 -> 3.1.20220217190813 2022-02-18 00:36:37 -05:00