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483 commits

Author SHA1 Message Date
Justin Bedő 7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
coolneng 6220ede045
HDF5Array: fix build 2021-11-05 12:29:05 +01:00
Justin Bedo 30e8835d5c
rPackages.{HierO,tiledb,x13binary,switchr}: mark broken 2021-11-04 21:20:04 +11:00
Justin Bedo 9523357453
rPackages.systemPipeShiny: requires home 2021-11-04 21:19:29 +11:00
Justin Bedo 23b57f2e6a
rPackages.flowWorkspace: fix missing zlib dependency 2021-11-04 21:18:44 +11:00
Justin Bedo 40ff9b267f
rPackages.PoissonBionomial: fix missing dependency 2021-11-04 21:18:21 +11:00
Justin Bedo a71c0e1615
rPackages.RmecabKo: fix missing dependency 2021-11-04 21:18:05 +11:00
Justin Bedo 6611a558d3
rPackages.{trackViewer,themetagenomics,NanoMethViz}: fix missing zlib dependencies 2021-11-04 21:17:35 +11:00
Justin Bedo 71723e1f68
rPackages.rrd: fix build 2021-11-04 21:16:51 +11:00
Justin Bedo 7264b569ac
rPackages.RcppCWB: fix build 2021-11-04 21:16:26 +11:00
Justin Bedo ab946b5113
rPackages.{scModels,multibridge}: add mpfr dependency 2021-11-04 16:39:04 +11:00
Justin Bedo c9ce16ee69
rPackages.valse: mark broken 2021-11-04 16:04:12 +11:00
Justin Bedo cad71004f7
rPackages: fix builds requiring gsl 2021-11-04 16:04:03 +11:00
Justin Bedo 8920d6bce7
rPackages.nullrangesData: mark as broken 2021-11-04 09:30:20 +11:00
Justin Bedo 2b786e821c
rPackages.proj4: fix build 2021-11-04 09:30:11 +11:00
Justin Bedo 74aa5fc758
rPackages.{HDF5Array,FLAMES,ncdfFlow}: fix missing zlib dependency 2021-11-04 09:29:55 +11:00
Justin Bedo 93168abf30
rPackages.rawrr: fix missing mono dependency 2021-11-04 09:29:41 +11:00
Justin Bedo a451b3441f
rPackages.arrow: fix build 2021-11-04 09:04:28 +11:00
Justin Bedo 803ae4b5f3
rPackages.{fixest,paxtoolsr}: fix new builds requiring home 2021-11-04 09:03:44 +11:00
Justin Bedo 3c6769b975
rPackages: CRAN and BioC update 2021-11-02 17:49:26 +11:00
Justin Bedo 9f69e37ccc
rPackages: fix builds requiring gsl 2021-11-01 19:39:52 +11:00
Justin Bedo ed24de47ab
rPackages: fix builds requiring home 2021-11-01 18:24:56 +11:00
Justin Bedo 92ed7e16b6
rPackages.RoBMA: fix missing dependency 2021-11-01 17:44:53 +11:00
Justin Bedo 1f0317cd5b
rPackages.BayesXsrc: fix build 2021-10-26 09:31:32 +11:00
Justin Bedo 69c284c3c0
rPackages: fix compression library dependencies 2021-10-25 18:12:13 +11:00
Justin Bedo 7aa68ac8ae
rPackages: fix packages requiring home during build 2021-10-25 18:12:12 +11:00
tpob e3a5f66a77 fix httpgd cairo dependency missing 2021-10-25 09:36:02 +08:00
Justin Bedo 7f8ec07897
rPackages: update CRAN and BIOC package sets 2021-10-22 14:35:36 +11:00
Justin Bedo 71eeb7ee56
Merge remote-tracking branch 'origin/master' into r-updates 2021-10-17 21:41:51 +11:00
Justin Bedo b1d8a801a0
rPackages.mzR: fix aarch64-linux build 2021-10-16 07:44:35 +11:00
Justin Bedo e26f35b8ce
rPackages.h2o: disable JAR fetching while in nix build 2021-10-15 11:22:46 +11:00
Justin Bedo 4c96ee566d
rPackages.CNEr: fix build 2021-10-13 07:02:08 +11:00
Justin Bedo db5b03ba89
rPackages.EMCluster: fix build 2021-10-13 06:59:10 +11:00
Justin Bedo 0e6a38a1b0
rPackages.DiffBind: fix build 2021-10-13 06:56:35 +11:00
Justin Bedo a644e88ab4
rPackages.DirichletMultinomial: fix build 2021-10-13 06:51:43 +11:00
Justin Bedo 7af2111792
rPackages.proj4: mark as broken 2021-10-12 09:05:10 +11:00
Justin Bedo 09730dc399
rPackages.av: mark as broken 2021-10-12 08:37:18 +11:00
Justin Bedo 403bcccbb3
rPackages.R_cache: shift override to requiring home framework 2021-10-12 08:18:04 +11:00
Justin Bedo 83ada1edee
rPackages: mark R.cache depenencies as requiring home 2021-10-12 08:15:26 +11:00
Justin Bedo 6dbe815676
rPackages.keyring: fix build 2021-10-12 08:14:36 +11:00
Justin Bedo 95c7c9555a
rPackages.mzR: fix build 2021-10-12 08:14:36 +11:00
Justin Bedo 07bf8a26b7
rPackages.x13binary: mark broken 2021-10-11 22:26:11 +11:00
Justin Bedo a50b96d990
rPackages.ggiraph: fix build 2021-10-11 22:21:25 +11:00
Justin Bedo e6bf94c615
rPackages.OmnipathR: fix build 2021-10-11 22:11:22 +11:00
Justin Bedo 7f9e8c1d42
rPackages.NetLogoR: mark as broken 2021-10-11 22:10:41 +11:00
Justin Bedo 2ab8998641
rPackages.MatchIt: backport build patch 2021-10-11 22:10:41 +11:00
Justin Bedo 22e4ee209e
rPackages: unpin all GSL 1 dependencies 
All packages now successfully build against current GSL.
 2021-10-11 22:10:41 +11:00
Justin Bedo 5e49d8461a
rPackages.rgl: mark as broken 2021-10-11 22:10:40 +11:00
Thomas Churchman c417b44d83
rPackages: introduce packagesRequiringHome override 
Some R packages require access to a home directory to pass install tests. Extend
r-modules to allow creating a temporary home directory for packages with
such requirements.
 2021-10-11 18:23:42 +11:00
Justin Bedő 68f25d5a86
Merge pull request #140170 from marsam/r-hydra 
R: don't restrict hydraPlatforms
 2021-10-07 08:54:26 +11:00