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277 commits

Author SHA1 Message Date
Mitsuhiro Nakamura 89a5e6db55 rPackages.JuniperKernel: fix non-Darwin build 2018-05-15 17:50:11 +09:00
Mitsuhiro Nakamura d35604d910 rPackages: fix binutils path on Darwin 2018-05-12 20:51:43 +09:00
Peter Simons 94295e3cee R: update CRAN and BIOC package sets 2018-04-24 09:19:38 +02:00
Shea Levy 05e375d710
Merge remote-tracking branch 'origin/master' into staging 2018-03-28 09:36:47 -04:00
Graham Christensen 92d53362d4
Move all nixpkgs doc files in to the doc directory 
This makes a makefile-driven developer workflow nicer.
 2018-03-25 19:52:00 -04:00
Matthew Bauer 9109a90479 treewide: remove some more gettext references 2018-03-22 16:50:14 -05:00
Peter Simons 9c207cd922 R: fix evaluation errors 2018-03-15 21:14:29 +01:00
Peter Simons 52dce0fb38 R: update the CRAN and BIOC package sets 2018-03-15 19:39:55 +01:00
Averell Dalton 028e67abce rPackages.mongolite: fix build 2018-03-10 04:01:49 +01:00
Vladimír Čunát 565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Peter Simons a06b81b8ad
Merge pull request #35651 from mnacamura/r-xml2-darwin 
rPackages.xml2: fix darwin build
 2018-02-26 20:16:16 +01:00
Mitsuhiro Nakamura 4b1627d313 rPackages.xml2: fix darwin build 2018-02-26 10:47:57 +09:00
Mitsuhiro Nakamura 671e3f5c4d rPackages.JuniperKernel: fix darwin build 2018-02-26 10:00:00 +09:00
Alexander V. Nikolaev 0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Justin Bedo 8d03d9b9af
rPackages: add bioconductor archive url 2018-02-21 09:58:17 +11:00
Justin Bedo cfc07bcf0e
bioconductor: 3.4 -> 3.6 2018-02-21 09:58:17 +11:00
Mitsuhiro Nakamura c4658ac0a4 rPackages.pbdZMQ: fix package loading on Darwin 2018-02-10 00:54:28 +09:00
Mitsuhiro Nakamura 2533720976 rPackages.data_table: OpenMP support on Darwin 2018-01-19 19:30:55 +09:00
Daiderd Jordan 5a02143c20
Merge pull request #33010 from LnL7/cacert-hook 
cacert: add hook that sets SSL_CERT_FILE
 2018-01-07 09:55:15 +01:00
Robin Gloster ee1c85aee9 mariadb: lib -> connector-c 2017-12-29 02:18:35 +01:00
Daiderd Jordan 091c2b9f04
cacert: cleanup exporting SSL_CERT_FILE 2017-12-27 21:36:32 +01:00
Peter Simons 65b15c40f1 R: update package set 2017-12-01 13:48:26 +01:00
Peter Simons 458331408e r-openssl: fix build 2017-11-30 18:45:47 +01:00
John Ericson 405412dfd9
Merge pull request #31775 from obsidiansystems/stdenv-both-propagated-files 
stdenv setup: Always use both propagated files
 2017-11-22 15:23:37 -05:00
John Ericson da19c34d0f stdenv setup: Always use both propagated files 
This continues #23374, which always kept around both attributes, by
always including both propagated files: `propgated-native-build-inputs`
and `propagated-build-inputs`. `nativePkgs` and `crossPkgs` are still
defined as before, however, so this change should only barely
observable.

This is an incremental step to fully keeping the dependencies separate
in all cases.
 2017-11-21 10:44:44 -05:00
Matthew Justin Bauer 24e38f3075
r-modules: fix eval 
Fixes #31508
 2017-11-12 21:49:41 -06:00
Maciej Kazulak 42b70ae5ed nixpkgs manual: add rstudio shell.nix example 
Provide an example of a self-contained shell.nix for rstudio with
additional packages.
 2017-11-04 12:26:08 +01:00
Hamish Mackenzie 8870d1a67d r-modules: Fix a number of popular R packages 
The R V8 package still depends on V8 3.14 so this is also included.
 2017-10-21 11:29:21 +01:00
Peter Simons 11131d5fc1 R: update package set 2017-09-29 15:21:09 +02:00
Peter Simons aa9bebf261 R: update package set 2017-08-31 21:59:06 +02:00
Mitsuhiro Nakamura c5fe03ace2 r-pbdZMQ: fix Darwin install 2017-07-14 14:32:51 +09:00
Peter Simons b1ebe7a72c r-modules: update package set 2017-07-02 09:51:42 +02:00
Chris Hodapp 29969a5ec7 rstudio: Fix recompilation issue with custom package set 
This attempts to fix the issue described at
https://github.com/NixOS/nixpkgs/pull/22219#issuecomment-291801133.
Any change to the custom packages passed to RStudio causes this to
completely rebuild RStudio, which is completely unnecessary and also a
bit of a hindrance as it's a fairly slow build.

This rolls back most of that old PR, and instead implements something
more like rWrapper.  Existing configurations with the old useRPackages
will break.
 2017-05-01 09:46:40 -04:00
Peter Simons 85a9e6dcdf R: update list of broken packages (and some cosmetic) 2017-04-24 15:39:54 +02:00
Peter Simons 430cbcfd2b R: update CRAN and BIOC package sets 2017-04-24 15:39:08 +02:00
Chris Hodapp 80beb55cfc imager (r-modules): add pkgs.x11 to fix build, unmark imager/ForestTools as broken 2017-04-20 14:18:01 -04:00
Peter Simons add394d8f1 r-modules: update CRAN package set 2017-03-07 14:56:46 +01:00
Peter Simons f4595fa555 r-modules: drop broken irkernel package set 
We can no longer update that package set since, apparently, it has moved
to a different packaging scheme.
 2017-03-07 14:56:46 +01:00
Peter Simons 3dc4e12ff0 r-modules: remove weird version assertion 2017-03-07 14:56:46 +01:00
Nikolay Amiantov 477b507a4f rPackages: remove old cuda-related patches 
gputools doesn't build but because of unrelated linking issues.
 2017-02-28 17:31:07 +03:00
Nikolay Amiantov 6f3e071755 rPackages: try to unbreak reverse dependencies of cudatoolkit 2017-02-28 17:22:06 +03:00
Domen Kožar ffe935ee86 Merge pull request #23104 from dtzWill/fix/generate-shell 
R/generate-shell: Use R from current tree, fix missing wget dep.
 2017-02-27 14:06:17 +01:00
Domen Kožar a7dc912460 Merge pull request #23069 from lukego/R-packages-readme 
r-modules/README.md: mention generate-shell.nix
 2017-02-27 14:04:35 +01:00
Domen Kožar 4ccb553b70 Merge pull request #22817 from jbedo/r 
R: 3.2.4 -> 3.3.2
 2017-02-27 14:02:13 +01:00
Domen Kožar 7ed28a0b78
R: fix bio3d build 2017-02-27 13:51:55 +01:00
Justin Bedo 4c2d75f58c
R: unmark edgeR and limma as broken 2017-02-24 15:52:10 +11:00
Justin Bedo 4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Will Dietz 2f303bc10e R/generate-shell: Use R from current tree, fix missing wget dep. 
Without this change, the 'R' version used might be the wrong
one which changes the package lists used.

Fixes #19530.
 2017-02-23 07:46:20 -06:00
Luke Gorrie a000ec038e r-modules/README.md: mention generate-shell.nix 2017-02-22 04:48:50 +00:00
Eelco Dolstra 9d6a55aefd
~/.nixpkgs -> ~/.config/nixpkgs 
The former is still respected as a fallback for config.nix for
backwards compatibility (but not for overlays because they're a new
feature).
 2017-02-01 16:07:55 +01:00