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341 commits

Author SHA1 Message Date
Vladimír Čunát eab41878ac
Merge branch 'master' into staging-next 2019-09-24 08:14:34 +02:00
Jörg Thalheim c89df5544e
Merge pull request #69333 from mnacamura/r-ucminf 
r-ucminf: fix build on Darwin
 2019-09-24 03:36:25 +01:00
Jörg Thalheim b47d81393d
Merge pull request #69330 from mnacamura/r-rf 
r-randomForest: fix build on Darwin
 2019-09-24 03:24:06 +01:00
Jörg Thalheim adc066fec9
Merge pull request #69332 from mnacamura/r-minqa 
r-minqa: fix build on Darwin
 2019-09-24 03:23:19 +01:00
Mitsuhiro Nakamura 8d64b03b0c r-ucminf: fix build on Darwin 2019-09-24 09:36:22 +09:00
Mitsuhiro Nakamura aefe6bc2e1 r-minqa: fix build on Darwin 2019-09-24 08:06:26 +09:00
Mitsuhiro Nakamura 3001a1f3ff r-pan: fix build on Darwin 2019-09-24 07:59:04 +09:00
Mitsuhiro Nakamura 8df7139996 r-randomForest: fix build on Darwin 2019-09-24 07:23:25 +09:00
Vladimír Čunát 22a216849b
Re-Revert "Merge branch 'staging-next'" 
This reverts commit f8a8fc6c7c.
 2019-09-22 09:38:09 +02:00
Vladimír Čunát f8a8fc6c7c
Revert "Merge branch 'staging-next'" 
This reverts commit 41af38f372, reversing
changes made to f0fec244ca.

Let's delay this.  We have some serious regressions.
 2019-09-21 20:05:09 +02:00
Izorkin 329a88efa7 treewide: replace mysql.connector-c to libmysqlclient 2019-09-09 15:55:34 +03:00
volth 7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
cfhammill 8e5aae5a19 Fix broken builds for rgdal and sf R packages 
Builds were failing to include PROJ, depending on proj.dev
appears to fix it.
 2019-09-02 16:23:24 +03:00
Peter Simons 8ac6b77eff
Merge pull request #66204 from jabranham/r-pkgs 
R: Update CRAN and bioconductor packages
 2019-08-07 10:24:37 +02:00
Alex Branham eab786451f
R: Update CRAN and bioconductor packages 2019-08-06 08:49:39 -05:00
Dominic Steinitz 4788c7eb28 Ensure sundialr builds on macos. 2019-08-06 13:45:44 +01:00
Frederik Rietdijk 7cf5909fad Merge staging-next into staging 2019-07-09 15:44:08 +02:00
Thomas Tuegel 51d78034a1
wrapQtAppsHook: Remove ad hoc Qt wrappers 2019-07-05 10:42:08 -05:00
Alex Branham 46bca1d643
R: Update CRAN and bioconductor packages 2019-07-02 15:48:06 -05:00
Alex Branham 00b202e34a
rPackages.git2r: Use system libgit2 
Otherwise git2r builds a bundled libgit2
 2019-06-14 10:05:07 -05:00
c0bw3b 9cb260d091 [treewide] delete unused patches 2019-05-04 19:52:24 +02:00
Alex Branham 0a80d3dc82 R: update CRAN and Bioconductor package sets 
Closes https://github.com/NixOS/nixpkgs/pull/59186.
 2019-04-11 20:37:18 +02:00
Peter Simons 3c9ff308e7
Merge pull request #58467 from mnacamura/r-sys 
r-sys: remove obsolete dependency
 2019-03-28 12:42:19 +01:00
Mitsuhiro Nakamura 157921f2e7 rPackages: fix missing dependency to libiconv 2019-03-28 12:11:47 +09:00
Mitsuhiro Nakamura d07c3139ed r-sys: remove obsolete dependency 2019-03-28 11:20:04 +09:00
Alex Branham 8dcba2b842 R: update CRAN and Bioconductor package sets 
Closes https://github.com/NixOS/nixpkgs/pull/57423.
 2019-03-14 19:50:37 +01:00
Markus Ankenbrand 7fcfbcdbc9 rPackages.phytools: fix installation 2019-03-06 11:39:48 +01:00
Alex Branham ec03ed450c update R package set 
Closes https://github.com/NixOS/nixpkgs/pull/55462.
 2019-02-10 11:16:19 +01:00
Alex Branham 48541ab6b9 R: update CRAN and BIOC package sets 
Closes https://github.com/NixOS/nixpkgs/pull/53414.
 2019-01-08 09:34:37 +01:00
Alex Branham 6f7459b40b
R: update CRAN package set 2018-12-12 11:17:25 -06:00
Edmund Wu a898f88d57
rstudioWrapper: include desktop file 2018-12-07 16:44:01 -05:00
Joachim F f0dbbdf970
Merge pull request #51581 from joachifm/rWrapper-local-runCommand 
Implement R wrappers as local-only runCommand
 2018-12-07 09:17:44 +00:00
Christian Kauhaus 3b445042ac rPackages.littler: fix build (#51282) 
littler gives a wrapped called `r` (or `lr` for non-case-preserving
systems like Darwin) which works as shebang or pipe target.

The build was completely broken before (missing deps).

Symlink executables and manpage into standard locations so that this
packages also works in `environment.systemPackages`.
 2018-12-06 17:22:31 +01:00
Joachim Fasting 21d83e5b11
rstudioWrapper: use runCommand, local build only 
This seems more appropriate for a wrapper generator.
 2018-12-05 20:59:41 +01:00
Joachim Fasting d2b467a2de
rWrapper: use runCommand, local build only 
This seems more appropriate for a wrapper generator.
 2018-12-05 20:59:35 +01:00
Timo Kaufmann 63b39af496
pythonPackages.rpy2: various fixes (#51084) 
- make sure libreadline is found at runtime
- make sure python libraries are found at runtime
- add libraries necessary to pass the testsuite and standard libraries
 2018-11-27 18:24:37 +01:00
Massimo Redaelli 5afe1e7c70 rstudio: fix qt plugins not found 2018-11-23 23:10:29 +01:00
Averell Dalton 25e68e3048 r-ps: patchShebangs in ./configure to fix build 2018-11-02 23:02:04 +01:00
Peter Simons c9e1380626 r-nloptr: fix build by adding pkgconfig 2018-11-02 17:50:18 +01:00
Peter Simons 9b63cc6313 r-rlang: patch shebang in configure script to fix the build 2018-11-02 17:50:18 +01:00
Tom McLaughlin cac5c9401e R: update CRAN and BIOC package sets 
Closes https://github.com/NixOS/nixpkgs/pull/49430.
 2018-11-02 17:50:18 +01:00
Rob Vermaas 3f719b0fad Fix build for rPackages.units 
(cherry picked from commit 1eb1fec3ae)
 2018-10-08 12:53:43 +02:00
ivanbrennan 989f24befc
git2r: add SSH support 
When building the devtools R module, which depends on git2r, it reports
that libssh2 cannot be found, and falls back to building without SSH
support. Adding libssh2.dev to git2r's native build inputs fixes this.
 2018-09-11 16:39:20 -04:00
Ryan Mulligan 73ae8e53e2 rPackages.RPostgres: fix configure paths and includes 
closes #46208
 2018-09-09 14:37:28 -07:00
Mitsuhiro Nakamura 5e42a081a3 r-jqr: fix build (#45333) 2018-08-20 00:08:28 +02:00
volth e6d3c65442
r-packages: fix regression 2018-08-04 06:19:08 +00:00
Mitsuhiro Nakamura 0a541aa38c rPackages.buildRPackage: fix error if requireX is missing 2018-08-03 01:08:35 +09:00
Mitsuhiro Nakamura 559997179d rPackages: export buildRPackage 2018-08-03 01:08:07 +09:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
Markus Ankenbrand 775fd4bfba rPackages.haven: fix installation 2018-07-12 11:07:27 +02:00